miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31226 3' -57 NC_006560.1 + 122543 0.65 0.875839
Target:  5'- cGaCUGCGGGccggguucucgcggUGGCGacugaGCCGGUCGGc- -3'
miRNA:   3'- aC-GACGCCC--------------ACUGCa----CGGUCAGCUug -5'
31226 3' -57 NC_006560.1 + 3930 0.66 0.870744
Target:  5'- cGCcGCGGG-GGCGgcGCCgcGGUCGGcgGCg -3'
miRNA:   3'- aCGaCGCCCaCUGCa-CGG--UCAGCU--UG- -5'
31226 3' -57 NC_006560.1 + 3228 0.66 0.855618
Target:  5'- gGCgGCGGGcggcGGCGUGUgGG-CGGGCc -3'
miRNA:   3'- aCGaCGCCCa---CUGCACGgUCaGCUUG- -5'
31226 3' -57 NC_006560.1 + 3278 0.66 0.855618
Target:  5'- cGCcGCGGGggucgGGCccGCCGGgCGGGCg -3'
miRNA:   3'- aCGaCGCCCa----CUGcaCGGUCaGCUUG- -5'
31226 3' -57 NC_006560.1 + 33209 0.66 0.847749
Target:  5'- gGCcGCGGGgcaGACGgggcagGCCGGcgaCGGGCa -3'
miRNA:   3'- aCGaCGCCCa--CUGCa-----CGGUCa--GCUUG- -5'
31226 3' -57 NC_006560.1 + 59449 0.66 0.847749
Target:  5'- gUGC-GuCGGGagGGCGggcgGCCGGcCGAACg -3'
miRNA:   3'- -ACGaC-GCCCa-CUGCa---CGGUCaGCUUG- -5'
31226 3' -57 NC_006560.1 + 135985 0.66 0.847749
Target:  5'- gGC-GCGcGGUGGCG-GCCGGgggCGGGa -3'
miRNA:   3'- aCGaCGC-CCACUGCaCGGUCa--GCUUg -5'
31226 3' -57 NC_006560.1 + 39458 0.66 0.847749
Target:  5'- cGCUGCGcGGUcGGCGccGCCGG-CGcGGCg -3'
miRNA:   3'- aCGACGC-CCA-CUGCa-CGGUCaGC-UUG- -5'
31226 3' -57 NC_006560.1 + 34796 0.66 0.839685
Target:  5'- gGCUGCGGGguuccgcGGCGcgGCCGGggccaCGAc- -3'
miRNA:   3'- aCGACGCCCa------CUGCa-CGGUCa----GCUug -5'
31226 3' -57 NC_006560.1 + 76364 0.67 0.831432
Target:  5'- -cCUGCGGGUGGCGgcgaucCCGG-CGAccGCg -3'
miRNA:   3'- acGACGCCCACUGCac----GGUCaGCU--UG- -5'
31226 3' -57 NC_006560.1 + 119771 0.67 0.811776
Target:  5'- cGCUGUgccGGGUGGCGgUGCCcccgcccgacccccGG-CGGGCg -3'
miRNA:   3'- aCGACG---CCCACUGC-ACGG--------------UCaGCUUG- -5'
31226 3' -57 NC_006560.1 + 147536 0.67 0.805618
Target:  5'- cGCUGUcGGUGACGggcugGCCcaugCGGGCg -3'
miRNA:   3'- aCGACGcCCACUGCa----CGGuca-GCUUG- -5'
31226 3' -57 NC_006560.1 + 13525 0.67 0.805618
Target:  5'- gGCUGCacguGGUaGACGcGCCGcacGUCGGGCg -3'
miRNA:   3'- aCGACGc---CCA-CUGCaCGGU---CAGCUUG- -5'
31226 3' -57 NC_006560.1 + 68051 0.67 0.805618
Target:  5'- cUGCUGCGGGcccugaccucccUGGCGgccGCCAGaCcGGCg -3'
miRNA:   3'- -ACGACGCCC------------ACUGCa--CGGUCaGcUUG- -5'
31226 3' -57 NC_006560.1 + 81864 0.67 0.796688
Target:  5'- gGUUGCaGGG-GACGUccGcCCAGUCGcGCa -3'
miRNA:   3'- aCGACG-CCCaCUGCA--C-GGUCAGCuUG- -5'
31226 3' -57 NC_006560.1 + 8374 0.67 0.796688
Target:  5'- gGCUGCGGGUc-CGUcuGUCGGUCGcuCg -3'
miRNA:   3'- aCGACGCCCAcuGCA--CGGUCAGCuuG- -5'
31226 3' -57 NC_006560.1 + 123783 0.68 0.759573
Target:  5'- cUGCUgGCGucGGUGAcCGUGCCccgCGAGCu -3'
miRNA:   3'- -ACGA-CGC--CCACU-GCACGGucaGCUUG- -5'
31226 3' -57 NC_006560.1 + 72206 0.68 0.759573
Target:  5'- cGCUGCGcGGcgacGACGUccccgggacgccGCCGGUCGGc- -3'
miRNA:   3'- aCGACGC-CCa---CUGCA------------CGGUCAGCUug -5'
31226 3' -57 NC_006560.1 + 125829 0.68 0.759573
Target:  5'- aGCUGCGGGUgguGACGcaGCCcc-CGAGCc -3'
miRNA:   3'- aCGACGCCCA---CUGCa-CGGucaGCUUG- -5'
31226 3' -57 NC_006560.1 + 95214 0.68 0.74999
Target:  5'- aUGCUGCGGGUcagcguccacGGCGaggugcUGCCGG-CGAc- -3'
miRNA:   3'- -ACGACGCCCA----------CUGC------ACGGUCaGCUug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.