miRNA display CGI


Results 1 - 20 of 268 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31226 5' -60.7 NC_006560.1 + 131177 0.66 0.703724
Target:  5'- cGGCCGCcGCGGGGgCGcccgGC-CGCCu -3'
miRNA:   3'- aUCGGCGcUGCUCCgGCa---CGuGUGGu -5'
31226 5' -60.7 NC_006560.1 + 130416 0.66 0.703724
Target:  5'- cGGCCcuggaGCG-CGAGGUgGgcgGCGCGCCc -3'
miRNA:   3'- aUCGG-----CGCuGCUCCGgCa--CGUGUGGu -5'
31226 5' -60.7 NC_006560.1 + 126406 0.66 0.703724
Target:  5'- -cGCgCGCGGCGcgcauGGaGCCGcgcGCGCGCCGg -3'
miRNA:   3'- auCG-GCGCUGC-----UC-CGGCa--CGUGUGGU- -5'
31226 5' -60.7 NC_006560.1 + 94938 0.66 0.703724
Target:  5'- gAGCagaGCGACGAGGag--GCGCugCGc -3'
miRNA:   3'- aUCGg--CGCUGCUCCggcaCGUGugGU- -5'
31226 5' -60.7 NC_006560.1 + 39481 0.66 0.703724
Target:  5'- -cGCgGCGACGGGGCCucgccgucGUcGUAuCGCCGa -3'
miRNA:   3'- auCGgCGCUGCUCCGG--------CA-CGU-GUGGU- -5'
31226 5' -60.7 NC_006560.1 + 147592 0.66 0.702742
Target:  5'- cGGCCcccgaggGUGACgGAGGCCGggGC-CGCCu -3'
miRNA:   3'- aUCGG-------CGCUG-CUCCGGCa-CGuGUGGu -5'
31226 5' -60.7 NC_006560.1 + 136939 0.66 0.697823
Target:  5'- cGGCUucgGCGGCaccuuccgcuccuucGAGGCCGUGCuGCGCg- -3'
miRNA:   3'- aUCGG---CGCUG---------------CUCCGGCACG-UGUGgu -5'
31226 5' -60.7 NC_006560.1 + 2074 0.66 0.697823
Target:  5'- -cGCgGCGGCGGGGuCCGggggcccggcgucgGCGCGCa- -3'
miRNA:   3'- auCGgCGCUGCUCC-GGCa-------------CGUGUGgu -5'
31226 5' -60.7 NC_006560.1 + 26903 0.66 0.693878
Target:  5'- gGGCCGgGACGGGG--GUGaCugGCCGc -3'
miRNA:   3'- aUCGGCgCUGCUCCggCAC-GugUGGU- -5'
31226 5' -60.7 NC_006560.1 + 146513 0.66 0.693878
Target:  5'- gAGCUGCGcCGggcGGGCCG-GCGCGUCGg -3'
miRNA:   3'- aUCGGCGCuGC---UCCGGCaCGUGUGGU- -5'
31226 5' -60.7 NC_006560.1 + 22664 0.66 0.693878
Target:  5'- cGGgCGCaGCGAGcGCCGccgcgcGCGCGCCGc -3'
miRNA:   3'- aUCgGCGcUGCUC-CGGCa-----CGUGUGGU- -5'
31226 5' -60.7 NC_006560.1 + 92380 0.66 0.693878
Target:  5'- cGGCggCGCGGCccugGAGGCCGgggcccGCGCGCUc -3'
miRNA:   3'- aUCG--GCGCUG----CUCCGGCa-----CGUGUGGu -5'
31226 5' -60.7 NC_006560.1 + 19418 0.66 0.693878
Target:  5'- -cGCCGCGGCGGcgcucGGCUgagcugGUGUcCGCCAc -3'
miRNA:   3'- auCGGCGCUGCU-----CCGG------CACGuGUGGU- -5'
31226 5' -60.7 NC_006560.1 + 54171 0.66 0.693878
Target:  5'- cUGGCCGCccUGAGcGCCaUGCuCACCAa -3'
miRNA:   3'- -AUCGGCGcuGCUC-CGGcACGuGUGGU- -5'
31226 5' -60.7 NC_006560.1 + 23578 0.66 0.693878
Target:  5'- -cGCCGUGccCGGgcuggcGGCCGcGCGCGCCGc -3'
miRNA:   3'- auCGGCGCu-GCU------CCGGCaCGUGUGGU- -5'
31226 5' -60.7 NC_006560.1 + 39961 0.66 0.69289
Target:  5'- gGGCgGCGGCGcGGGCggcugcgUGUGCuCGCCGc -3'
miRNA:   3'- aUCGgCGCUGC-UCCG-------GCACGuGUGGU- -5'
31226 5' -60.7 NC_006560.1 + 73822 0.66 0.690913
Target:  5'- gGGCgGUGaaggaguacuuccuGCGGGGCgCGUGUacaGCGCCAa -3'
miRNA:   3'- aUCGgCGC--------------UGCUCCG-GCACG---UGUGGU- -5'
31226 5' -60.7 NC_006560.1 + 107988 0.66 0.690913
Target:  5'- -cGCCGgGACGucGGCCGggucgucgccgcgcUGCGcCGCCGc -3'
miRNA:   3'- auCGGCgCUGCu-CCGGC--------------ACGU-GUGGU- -5'
31226 5' -60.7 NC_006560.1 + 8563 0.66 0.690913
Target:  5'- gUGGCUGCGGCGAucccgucagcggagGGCCauccaGCACACgAg -3'
miRNA:   3'- -AUCGGCGCUGCU--------------CCGGca---CGUGUGgU- -5'
31226 5' -60.7 NC_006560.1 + 78533 0.66 0.687945
Target:  5'- aGGUCGUgucguccgacguggaGACGuGGGCCGccgaccugaUGCACGCCGa -3'
miRNA:   3'- aUCGGCG---------------CUGC-UCCGGC---------ACGUGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.