miRNA display CGI


Results 1 - 20 of 238 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31229 3' -54.3 NC_006560.1 + 3613 0.66 0.960999
Target:  5'- gCGCCGGcGACGAggcccacgGCGcGCACGGcgGCg -3'
miRNA:   3'- gGCGGUU-CUGCUaga-----CGC-CGUGCU--UG- -5'
31229 3' -54.3 NC_006560.1 + 50788 0.66 0.960999
Target:  5'- cUCGCCGAcGCcGUCgUGCGGguggcCGCGAACg -3'
miRNA:   3'- -GGCGGUUcUGcUAG-ACGCC-----GUGCUUG- -5'
31229 3' -54.3 NC_006560.1 + 11147 0.66 0.960999
Target:  5'- gCC-CCGGGGCGGcgCgGCGaGCGCGAGa -3'
miRNA:   3'- -GGcGGUUCUGCUa-GaCGC-CGUGCUUg -5'
31229 3' -54.3 NC_006560.1 + 23504 0.66 0.960999
Target:  5'- gCCGCCGcggagugccuGGCGGUCUGCcGCGCc--- -3'
miRNA:   3'- -GGCGGUu---------CUGCUAGACGcCGUGcuug -5'
31229 3' -54.3 NC_006560.1 + 62744 0.66 0.960999
Target:  5'- aCCGCCGcaggGGGUGGUCcGCGGCGa-GGCa -3'
miRNA:   3'- -GGCGGU----UCUGCUAGaCGCCGUgcUUG- -5'
31229 3' -54.3 NC_006560.1 + 148242 0.66 0.960999
Target:  5'- cCC-CCucGACGGcggCUGCGGaCGCGGAg -3'
miRNA:   3'- -GGcGGuuCUGCUa--GACGCC-GUGCUUg -5'
31229 3' -54.3 NC_006560.1 + 20849 0.66 0.960999
Target:  5'- gCCcCCGAGGCGAUCc-CGGgACGAccGCu -3'
miRNA:   3'- -GGcGGUUCUGCUAGacGCCgUGCU--UG- -5'
31229 3' -54.3 NC_006560.1 + 26282 0.66 0.960999
Target:  5'- gCCGCCGgggagccuggcGGGCGGcuucugccccgUCgGCGGCcgcguagaagACGAGCg -3'
miRNA:   3'- -GGCGGU-----------UCUGCU-----------AGaCGCCG----------UGCUUG- -5'
31229 3' -54.3 NC_006560.1 + 2805 0.66 0.960999
Target:  5'- gCGCCGAGACG-UCggGgGGCcCGGu- -3'
miRNA:   3'- gGCGGUUCUGCuAGa-CgCCGuGCUug -5'
31229 3' -54.3 NC_006560.1 + 83493 0.66 0.960999
Target:  5'- aCGCCGAGuuugaggcgcGCGAggggGCGGgcCGCGGGCg -3'
miRNA:   3'- gGCGGUUC----------UGCUaga-CGCC--GUGCUUG- -5'
31229 3' -54.3 NC_006560.1 + 132955 0.66 0.960999
Target:  5'- -gGCCGAGGCGGUCgcGUGGgccCGgGGGCa -3'
miRNA:   3'- ggCGGUUCUGCUAGa-CGCC---GUgCUUG- -5'
31229 3' -54.3 NC_006560.1 + 70378 0.66 0.959927
Target:  5'- aCGCCAuggccgacgcggugAGcCGGUaCUGCGGCACcuACc -3'
miRNA:   3'- gGCGGU--------------UCuGCUA-GACGCCGUGcuUG- -5'
31229 3' -54.3 NC_006560.1 + 19447 0.66 0.959565
Target:  5'- uCCGCCAcGACGGaggacagccaCGGCugGGACc -3'
miRNA:   3'- -GGCGGUuCUGCUagac------GCCGugCUUG- -5'
31229 3' -54.3 NC_006560.1 + 29732 0.66 0.957347
Target:  5'- aCGCCGacacGGACGccgagcUCUGCGaGCcCGGGCc -3'
miRNA:   3'- gGCGGU----UCUGCu-----AGACGC-CGuGCUUG- -5'
31229 3' -54.3 NC_006560.1 + 63593 0.66 0.957347
Target:  5'- gCUGCC-GGugGuggCcGCGGCGCGcACg -3'
miRNA:   3'- -GGCGGuUCugCua-GaCGCCGUGCuUG- -5'
31229 3' -54.3 NC_006560.1 + 36893 0.66 0.957347
Target:  5'- gCCGCC-AGACGcUCc-CGGCGcCGGGCc -3'
miRNA:   3'- -GGCGGuUCUGCuAGacGCCGU-GCUUG- -5'
31229 3' -54.3 NC_006560.1 + 103026 0.66 0.957347
Target:  5'- gCGCCcggucGACGcgC-GgGGCGCGGGCg -3'
miRNA:   3'- gGCGGuu---CUGCuaGaCgCCGUGCUUG- -5'
31229 3' -54.3 NC_006560.1 + 44817 0.66 0.957347
Target:  5'- uCCGCCGcgcGGCaGGUCUgcGCGGCACc--- -3'
miRNA:   3'- -GGCGGUu--CUG-CUAGA--CGCCGUGcuug -5'
31229 3' -54.3 NC_006560.1 + 131842 0.66 0.957347
Target:  5'- aCGCCGcGGCGGcggCggcgacGCGGCGCGcGCu -3'
miRNA:   3'- gGCGGUuCUGCUa--Ga-----CGCCGUGCuUG- -5'
31229 3' -54.3 NC_006560.1 + 48861 0.66 0.957347
Target:  5'- gCGCCAucagcguccgggGGGCGcccGUCUccGCGGCGCGccGCg -3'
miRNA:   3'- gGCGGU------------UCUGC---UAGA--CGCCGUGCu-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.