miRNA display CGI


Results 1 - 20 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31229 5' -55.6 NC_006560.1 + 72354 0.66 0.949184
Target:  5'- gGUGUggggCGCGGCCCUCG-CGGgGGc -3'
miRNA:   3'- -CGCAagagGUGUCGGGAGCuGCUgCC- -5'
31229 5' -55.6 NC_006560.1 + 13069 0.66 0.949184
Target:  5'- aGCGUguagCgGCaggGGCCCUUGGCG-CGGu -3'
miRNA:   3'- -CGCAaga-GgUG---UCGGGAGCUGCuGCC- -5'
31229 5' -55.6 NC_006560.1 + 100492 0.66 0.949184
Target:  5'- aGCGgggggCCGCGGCgCUCGAagaucgcggcgcUGGCGGc -3'
miRNA:   3'- -CGCaaga-GGUGUCGgGAGCU------------GCUGCC- -5'
31229 5' -55.6 NC_006560.1 + 121641 0.66 0.949184
Target:  5'- aGCGUcC-CCAC-GCCCggaACGACGGu -3'
miRNA:   3'- -CGCAaGaGGUGuCGGGagcUGCUGCC- -5'
31229 5' -55.6 NC_006560.1 + 124842 0.66 0.949184
Target:  5'- cGCGUg---CGgGGUCCUCGugGACGc -3'
miRNA:   3'- -CGCAagagGUgUCGGGAGCugCUGCc -5'
31229 5' -55.6 NC_006560.1 + 44785 0.66 0.949184
Target:  5'- aGCGggCUCUGgGGCUCUgcggcgaGACGACGu -3'
miRNA:   3'- -CGCaaGAGGUgUCGGGAg------CUGCUGCc -5'
31229 5' -55.6 NC_006560.1 + 52998 0.66 0.949184
Target:  5'- cGCGUUCgCC-CGGCaCCUgGACcgggggccgGGCGGc -3'
miRNA:   3'- -CGCAAGaGGuGUCG-GGAgCUG---------CUGCC- -5'
31229 5' -55.6 NC_006560.1 + 15450 0.66 0.944926
Target:  5'- cGCGUUCgcgCCGCccgggccaggGGCUCguccuccugggUCGGCGACGc -3'
miRNA:   3'- -CGCAAGa--GGUG----------UCGGG-----------AGCUGCUGCc -5'
31229 5' -55.6 NC_006560.1 + 65097 0.66 0.944926
Target:  5'- uGCGaUCgacaCCAUGGCCC-CGG-GGCGGg -3'
miRNA:   3'- -CGCaAGa---GGUGUCGGGaGCUgCUGCC- -5'
31229 5' -55.6 NC_006560.1 + 98268 0.66 0.944926
Target:  5'- gGCGUguccucguuccUCUCCAaccccuucggGGCCCUgGcCGugGGg -3'
miRNA:   3'- -CGCA-----------AGAGGUg---------UCGGGAgCuGCugCC- -5'
31229 5' -55.6 NC_006560.1 + 4147 0.66 0.944926
Target:  5'- aGCGgcggCU-CAUGGCCacggCGGCGGCGGc -3'
miRNA:   3'- -CGCaa--GAgGUGUCGGga--GCUGCUGCC- -5'
31229 5' -55.6 NC_006560.1 + 82536 0.66 0.944926
Target:  5'- aGCGUUCUcggCCGCGGaUCUCcgGACGACa- -3'
miRNA:   3'- -CGCAAGA---GGUGUCgGGAG--CUGCUGcc -5'
31229 5' -55.6 NC_006560.1 + 3618 0.66 0.944926
Target:  5'- gGCGacgaggC-CCACGGCgCgcacggCGGCGACGGc -3'
miRNA:   3'- -CGCaa----GaGGUGUCGgGa-----GCUGCUGCC- -5'
31229 5' -55.6 NC_006560.1 + 73933 0.66 0.944487
Target:  5'- gGCGcagCUCCugGagucccugcccGCCUUCGACGcgcgcguGCGGg -3'
miRNA:   3'- -CGCaa-GAGGugU-----------CGGGAGCUGC-------UGCC- -5'
31229 5' -55.6 NC_006560.1 + 55445 0.66 0.942262
Target:  5'- gGCGggCgagCCcggggcgcccggggcAgGGCCCgccggCGACGACGGc -3'
miRNA:   3'- -CGCaaGa--GG---------------UgUCGGGa----GCUGCUGCC- -5'
31229 5' -55.6 NC_006560.1 + 26076 0.66 0.94044
Target:  5'- uGCGggCggaaCCcggGCGGCCCggCG-CGGCGGg -3'
miRNA:   3'- -CGCaaGa---GG---UGUCGGGa-GCuGCUGCC- -5'
31229 5' -55.6 NC_006560.1 + 113491 0.66 0.94044
Target:  5'- ----cCUCCACGGCgaacaugcgCCUCuuCGACGGg -3'
miRNA:   3'- cgcaaGAGGUGUCG---------GGAGcuGCUGCC- -5'
31229 5' -55.6 NC_006560.1 + 3881 0.66 0.94044
Target:  5'- ----aCUCCGCGGCggCgUCGGCGGCGu -3'
miRNA:   3'- cgcaaGAGGUGUCG--GgAGCUGCUGCc -5'
31229 5' -55.6 NC_006560.1 + 5296 0.66 0.94044
Target:  5'- gGCGUcgUCgUCgGCcGCCgCgugCGACGGCGGc -3'
miRNA:   3'- -CGCA--AG-AGgUGuCGG-Ga--GCUGCUGCC- -5'
31229 5' -55.6 NC_006560.1 + 82580 0.66 0.936208
Target:  5'- gGCGUUCcuccccccggCCGCGGCUCgccccgaggccccgGACGGCGGc -3'
miRNA:   3'- -CGCAAGa---------GGUGUCGGGag------------CUGCUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.