miRNA display CGI


Results 1 - 20 of 130 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31229 5' -55.6 NC_006560.1 + 51587 0.82 0.211848
Target:  5'- cGCGgugCUggccugccucgccgCCGCGGCCUUCGACGGCGGg -3'
miRNA:   3'- -CGCaa-GA--------------GGUGUCGGGAGCUGCUGCC- -5'
31229 5' -55.6 NC_006560.1 + 19545 0.76 0.438097
Target:  5'- gGCGUUCUCCuccgGCGGCCCccCGGaGGCGGc -3'
miRNA:   3'- -CGCAAGAGG----UGUCGGGa-GCUgCUGCC- -5'
31229 5' -55.6 NC_006560.1 + 443 0.75 0.493046
Target:  5'- cGCGgcCUCCGCGGCCUcccCGGCgGGCGGc -3'
miRNA:   3'- -CGCaaGAGGUGUCGGGa--GCUG-CUGCC- -5'
31229 5' -55.6 NC_006560.1 + 2447 0.75 0.512064
Target:  5'- aCGUUgCcgCCGCGGCCCaggcgCGGCGGCGGc -3'
miRNA:   3'- cGCAA-Ga-GGUGUCGGGa----GCUGCUGCC- -5'
31229 5' -55.6 NC_006560.1 + 5183 0.75 0.521686
Target:  5'- cGCGgcgaCgGCGGCCC-CGACGGCGGg -3'
miRNA:   3'- -CGCaagaGgUGUCGGGaGCUGCUGCC- -5'
31229 5' -55.6 NC_006560.1 + 134796 0.74 0.560817
Target:  5'- gGCGcgCUCCACGGCCC-CGcCcACGGu -3'
miRNA:   3'- -CGCaaGAGGUGUCGGGaGCuGcUGCC- -5'
31229 5' -55.6 NC_006560.1 + 92877 0.74 0.570734
Target:  5'- gGCGUUCaCCGCccgcGCCCUggagcgCGGCGGCGGc -3'
miRNA:   3'- -CGCAAGaGGUGu---CGGGA------GCUGCUGCC- -5'
31229 5' -55.6 NC_006560.1 + 82263 0.74 0.570734
Target:  5'- cGCGUcUgUCCGCGGUCggUGGCGGCGGg -3'
miRNA:   3'- -CGCA-AgAGGUGUCGGgaGCUGCUGCC- -5'
31229 5' -55.6 NC_006560.1 + 131146 0.73 0.629881
Target:  5'- cGCGcgCUCgcccccgCGCGGCUCUgGGCGGCGGc -3'
miRNA:   3'- -CGCaaGAG-------GUGUCGGGAgCUGCUGCC- -5'
31229 5' -55.6 NC_006560.1 + 84383 0.73 0.630888
Target:  5'- cGCGc-CUCC-CGGCUCgcccgCGACGACGGc -3'
miRNA:   3'- -CGCaaGAGGuGUCGGGa----GCUGCUGCC- -5'
31229 5' -55.6 NC_006560.1 + 71758 0.73 0.640959
Target:  5'- cGUGUUCUCCAgGGUCUaCGGCGAggUGGc -3'
miRNA:   3'- -CGCAAGAGGUgUCGGGaGCUGCU--GCC- -5'
31229 5' -55.6 NC_006560.1 + 145526 0.73 0.640959
Target:  5'- gGCGggcCUCgACccGCCCUCGGCGcCGGg -3'
miRNA:   3'- -CGCaa-GAGgUGu-CGGGAGCUGCuGCC- -5'
31229 5' -55.6 NC_006560.1 + 99733 0.72 0.651024
Target:  5'- cGCGUaCgccgCCGgGGCCC-CGACGACGc -3'
miRNA:   3'- -CGCAaGa---GGUgUCGGGaGCUGCUGCc -5'
31229 5' -55.6 NC_006560.1 + 22854 0.72 0.651024
Target:  5'- cGCGUgCUCUACGGCggCCUgGGCGACa- -3'
miRNA:   3'- -CGCAaGAGGUGUCG--GGAgCUGCUGcc -5'
31229 5' -55.6 NC_006560.1 + 50187 0.72 0.665087
Target:  5'- uCGggCgUCCACGGCCCcggacgcccccgggCGGCGGCGGc -3'
miRNA:   3'- cGCaaG-AGGUGUCGGGa-------------GCUGCUGCC- -5'
31229 5' -55.6 NC_006560.1 + 138070 0.72 0.6711
Target:  5'- aGCGc-CUCCGC-GUCCUCGGCGACc- -3'
miRNA:   3'- -CGCaaGAGGUGuCGGGAGCUGCUGcc -5'
31229 5' -55.6 NC_006560.1 + 10725 0.72 0.6711
Target:  5'- cGCGUgcuuccacgucgUCUCCACGGCCg-CGACGcCGa -3'
miRNA:   3'- -CGCA------------AGAGGUGUCGGgaGCUGCuGCc -5'
31229 5' -55.6 NC_006560.1 + 4736 0.72 0.691054
Target:  5'- gGCGacgcccgUCUCggcgGCGGCCCgCGGCGGCGGc -3'
miRNA:   3'- -CGCa------AGAGg---UGUCGGGaGCUGCUGCC- -5'
31229 5' -55.6 NC_006560.1 + 101682 0.72 0.691054
Target:  5'- -gGUUCUgcCCGCGGCUCaggaaggCGGCGGCGGc -3'
miRNA:   3'- cgCAAGA--GGUGUCGGGa------GCUGCUGCC- -5'
31229 5' -55.6 NC_006560.1 + 83946 0.71 0.700964
Target:  5'- gGCGgaC-CCggaggcGCAGCCCgaCGACGGCGGg -3'
miRNA:   3'- -CGCaaGaGG------UGUCGGGa-GCUGCUGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.