Results 21 - 40 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3123 | 3' | -57 | NC_001493.1 | + | 57507 | 0.68 | 0.799268 |
Target: 5'- gGCCAguguccaaUCG-GGAAC-CUcgaucgucaggaUCGGGACCGGu -3' miRNA: 3'- -UGGU--------AGCuCCUUGaGG------------AGCCCUGGCC- -5' |
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3123 | 3' | -57 | NC_001493.1 | + | 9222 | 0.68 | 0.799268 |
Target: 5'- cGCuCAUCGGGGAgcGCUCCaugaugUCGGGAUUc- -3' miRNA: 3'- -UG-GUAGCUCCU--UGAGG------AGCCCUGGcc -5' |
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3123 | 3' | -57 | NC_001493.1 | + | 21590 | 0.68 | 0.789453 |
Target: 5'- aACCgAUCGGgauggggauuaccGGGACgCCUCGGaGACCGa -3' miRNA: 3'- -UGG-UAGCU-------------CCUUGaGGAGCC-CUGGCc -5' |
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3123 | 3' | -57 | NC_001493.1 | + | 51172 | 0.68 | 0.788553 |
Target: 5'- cACCGUaaaCGGGGGGCUCCgucucuucguacCGGGAgaGGg -3' miRNA: 3'- -UGGUA---GCUCCUUGAGGa-----------GCCCUggCC- -5' |
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3123 | 3' | -57 | NC_001493.1 | + | 12951 | 0.68 | 0.787651 |
Target: 5'- cACCA-CGuGGAGaaCCUCGGGAguagagccuccgucCCGGg -3' miRNA: 3'- -UGGUaGCuCCUUgaGGAGCCCU--------------GGCC- -5' |
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3123 | 3' | -57 | NC_001493.1 | + | 128505 | 0.68 | 0.787651 |
Target: 5'- cACCA-CGuGGAGaaCCUCGGGAguagagccuccgucCCGGg -3' miRNA: 3'- -UGGUaGCuCCUUgaGGAGCCCU--------------GGCC- -5' |
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3123 | 3' | -57 | NC_001493.1 | + | 102127 | 0.68 | 0.781298 |
Target: 5'- uCCAUCGAGGGAUagaaCgaUGGGGCCGc -3' miRNA: 3'- uGGUAGCUCCUUGa---GgaGCCCUGGCc -5' |
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3123 | 3' | -57 | NC_001493.1 | + | 95831 | 0.68 | 0.772114 |
Target: 5'- cGCUccCGAGGAACgUCgUCGGGGgUGGc -3' miRNA: 3'- -UGGuaGCUCCUUG-AGgAGCCCUgGCC- -5' |
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3123 | 3' | -57 | NC_001493.1 | + | 34103 | 0.68 | 0.772114 |
Target: 5'- uGCCAuauUUGGGGA--UgCUCGGGGCuCGGg -3' miRNA: 3'- -UGGU---AGCUCCUugAgGAGCCCUG-GCC- -5' |
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3123 | 3' | -57 | NC_001493.1 | + | 29865 | 0.68 | 0.762809 |
Target: 5'- cGCCAgcUCGAgagucgcguugcGGAGCUCCagGGGaaGCUGGg -3' miRNA: 3'- -UGGU--AGCU------------CCUUGAGGagCCC--UGGCC- -5' |
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3123 | 3' | -57 | NC_001493.1 | + | 19934 | 0.68 | 0.75339 |
Target: 5'- cGCC-UCGuGG-GCUUCUCGGGAuaGGg -3' miRNA: 3'- -UGGuAGCuCCuUGAGGAGCCCUggCC- -5' |
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3123 | 3' | -57 | NC_001493.1 | + | 87938 | 0.68 | 0.75339 |
Target: 5'- uUUAUCGAGGucauGGCUCa-CGGGAUCGGc -3' miRNA: 3'- uGGUAGCUCC----UUGAGgaGCCCUGGCC- -5' |
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3123 | 3' | -57 | NC_001493.1 | + | 128552 | 0.69 | 0.743868 |
Target: 5'- aGCCGuUCGAgaaucGGGuCUCUgucaCGGGGCCGGa -3' miRNA: 3'- -UGGU-AGCU-----CCUuGAGGa---GCCCUGGCC- -5' |
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3123 | 3' | -57 | NC_001493.1 | + | 12998 | 0.69 | 0.743868 |
Target: 5'- aGCCGuUCGAgaaucGGGuCUCUgucaCGGGGCCGGa -3' miRNA: 3'- -UGGU-AGCU-----CCUuGAGGa---GCCCUGGCC- -5' |
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3123 | 3' | -57 | NC_001493.1 | + | 88175 | 0.69 | 0.743868 |
Target: 5'- cACC-UUGGGGAACgCC-CGGGguACCGGc -3' miRNA: 3'- -UGGuAGCUCCUUGaGGaGCCC--UGGCC- -5' |
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3123 | 3' | -57 | NC_001493.1 | + | 21082 | 0.69 | 0.703928 |
Target: 5'- gGCCAUCGAcuuggucuacggcGGGuacGCUCCcgCGGcACCGGg -3' miRNA: 3'- -UGGUAGCU-------------CCU---UGAGGa-GCCcUGGCC- -5' |
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3123 | 3' | -57 | NC_001493.1 | + | 111730 | 0.7 | 0.675044 |
Target: 5'- gACCGUCGGGGAcuuugacgcgcuGCUCg-CGGaGACCGc -3' miRNA: 3'- -UGGUAGCUCCU------------UGAGgaGCC-CUGGCc -5' |
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3123 | 3' | -57 | NC_001493.1 | + | 11126 | 0.7 | 0.665007 |
Target: 5'- cUCAgacCGAGG-GCUCC-CGGGACCaGGg -3' miRNA: 3'- uGGUa--GCUCCuUGAGGaGCCCUGG-CC- -5' |
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3123 | 3' | -57 | NC_001493.1 | + | 126681 | 0.7 | 0.665007 |
Target: 5'- cUCAgacCGAGG-GCUCC-CGGGACCaGGg -3' miRNA: 3'- uGGUa--GCUCCuUGAGGaGCCCUGG-CC- -5' |
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3123 | 3' | -57 | NC_001493.1 | + | 109837 | 0.7 | 0.665007 |
Target: 5'- uACgCGUCGAGGAAC-CCUCGGucgcucaCGGg -3' miRNA: 3'- -UG-GUAGCUCCUUGaGGAGCCcug----GCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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