Results 1 - 17 of 17 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3123 | 5' | -53.8 | NC_001493.1 | + | 40009 | 0.66 | 0.927807 |
Target: 5'- gAGCGGACCCCC-CUGUUccGUgcGCUCa -3' miRNA: 3'- -UUGCUUGGGGGuGACGAc-CAaaUGGG- -5' |
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3123 | 5' | -53.8 | NC_001493.1 | + | 20899 | 0.66 | 0.93312 |
Target: 5'- --gGGAUCCCCGgUGCcgcgGGagcgUACCCg -3' miRNA: 3'- uugCUUGGGGGUgACGa---CCaa--AUGGG- -5' |
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3123 | 5' | -53.8 | NC_001493.1 | + | 99686 | 0.66 | 0.927807 |
Target: 5'- gAACGGGaaCCCAC-GgaGGUggGCCCa -3' miRNA: 3'- -UUGCUUggGGGUGaCgaCCAaaUGGG- -5' |
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3123 | 5' | -53.8 | NC_001493.1 | + | 20402 | 0.66 | 0.927807 |
Target: 5'- uGAUGAGCCCgaGCUGCcaGGUgacCCCg -3' miRNA: 3'- -UUGCUUGGGggUGACGa-CCAaauGGG- -5' |
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3123 | 5' | -53.8 | NC_001493.1 | + | 50551 | 0.67 | 0.91642 |
Target: 5'- gGACGAGCCCgUgugGCUGGgu--CCCg -3' miRNA: 3'- -UUGCUUGGGgGugaCGACCaaauGGG- -5' |
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3123 | 5' | -53.8 | NC_001493.1 | + | 10054 | 0.67 | 0.904023 |
Target: 5'- uAGCGGuACCCCCuccuGCUGCUGcg--GCUCg -3' miRNA: 3'- -UUGCU-UGGGGG----UGACGACcaaaUGGG- -5' |
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3123 | 5' | -53.8 | NC_001493.1 | + | 125608 | 0.67 | 0.904023 |
Target: 5'- uAGCGGuACCCCCuccuGCUGCUGcg--GCUCg -3' miRNA: 3'- -UUGCU-UGGGGG----UGACGACcaaaUGGG- -5' |
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3123 | 5' | -53.8 | NC_001493.1 | + | 47409 | 0.67 | 0.91642 |
Target: 5'- -uCGAACCCCCcCUGaUGGUguugacgACCg -3' miRNA: 3'- uuGCUUGGGGGuGACgACCAaa-----UGGg -5' |
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3123 | 5' | -53.8 | NC_001493.1 | + | 93794 | 0.67 | 0.904023 |
Target: 5'- cGACGAGgCCgugaCCACgGCUGGUUU-CUCg -3' miRNA: 3'- -UUGCUUgGG----GGUGaCGACCAAAuGGG- -5' |
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3123 | 5' | -53.8 | NC_001493.1 | + | 120099 | 0.68 | 0.87628 |
Target: 5'- -uCGGugACCCCCGCcGCUgccgcgcccccgGGUgUGCCCa -3' miRNA: 3'- uuGCU--UGGGGGUGaCGA------------CCAaAUGGG- -5' |
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3123 | 5' | -53.8 | NC_001493.1 | + | 4545 | 0.68 | 0.87628 |
Target: 5'- -uCGGugACCCCCGCcGCUgccgcgcccccgGGUgUGCCCa -3' miRNA: 3'- uuGCU--UGGGGGUGaCGA------------CCAaAUGGG- -5' |
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3123 | 5' | -53.8 | NC_001493.1 | + | 55087 | 0.68 | 0.890634 |
Target: 5'- gAGCGAGCUCCgg--GCUGGUcgGCUCa -3' miRNA: 3'- -UUGCUUGGGGgugaCGACCAaaUGGG- -5' |
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3123 | 5' | -53.8 | NC_001493.1 | + | 74975 | 0.69 | 0.8339 |
Target: 5'- cAGCGGGCgCCCCGCUGCUgcaaGGggcaugacgacauCCCa -3' miRNA: 3'- -UUGCUUG-GGGGUGACGA----CCaaau---------GGG- -5' |
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3123 | 5' | -53.8 | NC_001493.1 | + | 67190 | 0.69 | 0.810137 |
Target: 5'- cAACGAACaugugccuaCCCCAgcGCUGGUUUACUUc -3' miRNA: 3'- -UUGCUUG---------GGGGUgaCGACCAAAUGGG- -5' |
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3123 | 5' | -53.8 | NC_001493.1 | + | 114677 | 0.7 | 0.79172 |
Target: 5'- -cUGAACCCCCugUccGUggGGUUgcugACCCg -3' miRNA: 3'- uuGCUUGGGGGugA--CGa-CCAAa---UGGG- -5' |
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3123 | 5' | -53.8 | NC_001493.1 | + | 119708 | 1.1 | 0.00294 |
Target: 5'- cAACGAACCCCCACUGCUGGUUUACCCg -3' miRNA: 3'- -UUGCUUGGGGGUGACGACCAAAUGGG- -5' |
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3123 | 5' | -53.8 | NC_001493.1 | + | 4153 | 1.1 | 0.00294 |
Target: 5'- cAACGAACCCCCACUGCUGGUUUACCCg -3' miRNA: 3'- -UUGCUUGGGGGUGACGACCAAAUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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