miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31230 3' -60.7 NC_006560.1 + 71084 0.66 0.728401
Target:  5'- ---gCgCUCCGGccCUUCCCCGgCCCGg -3'
miRNA:   3'- caaaGgGGGGCCa-GAAGGGGUgGGGU- -5'
31230 3' -60.7 NC_006560.1 + 29574 0.66 0.728401
Target:  5'- --cUCCCCUgCGGUUUcUCCuCCuCCCCGa -3'
miRNA:   3'- caaAGGGGG-GCCAGA-AGG-GGuGGGGU- -5'
31230 3' -60.7 NC_006560.1 + 72691 0.66 0.728401
Target:  5'- ---aCCCCgacgCCGGc---CCCCGCCCCGg -3'
miRNA:   3'- caaaGGGG----GGCCagaaGGGGUGGGGU- -5'
31230 3' -60.7 NC_006560.1 + 36629 0.66 0.718811
Target:  5'- --gUCCCCCCGGcgccaggcugUCUUCaaaUgGCCCUg -3'
miRNA:   3'- caaAGGGGGGCC----------AGAAGg--GgUGGGGu -5'
31230 3' -60.7 NC_006560.1 + 20799 0.66 0.718811
Target:  5'- --gUCCCCCCGag---CCCCcgaGCCCCc -3'
miRNA:   3'- caaAGGGGGGCcagaaGGGG---UGGGGu -5'
31230 3' -60.7 NC_006560.1 + 15378 0.66 0.718811
Target:  5'- --cUCCCCCCcGcCUccuccgccUCCuCCGCCCCc -3'
miRNA:   3'- caaAGGGGGGcCaGA--------AGG-GGUGGGGu -5'
31230 3' -60.7 NC_006560.1 + 20711 0.66 0.718811
Target:  5'- --gUCCCCCCGag---CCCCcgaGCCCCc -3'
miRNA:   3'- caaAGGGGGGCcagaaGGGG---UGGGGu -5'
31230 3' -60.7 NC_006560.1 + 48194 0.66 0.718811
Target:  5'- --aUCCCCCCGG-CggCCCUcuacaACCgCCu -3'
miRNA:   3'- caaAGGGGGGCCaGaaGGGG-----UGG-GGu -5'
31230 3' -60.7 NC_006560.1 + 47232 0.66 0.718811
Target:  5'- --cUCCCCCCGcGaCccCCCCAaCCCAa -3'
miRNA:   3'- caaAGGGGGGC-CaGaaGGGGUgGGGU- -5'
31230 3' -60.7 NC_006560.1 + 144954 0.66 0.709152
Target:  5'- ---aCCCCggCCGGcgCgccgggCCCCGCCCCc -3'
miRNA:   3'- caaaGGGG--GGCCa-Gaa----GGGGUGGGGu -5'
31230 3' -60.7 NC_006560.1 + 1566 0.66 0.708182
Target:  5'- --cUCUCCCC--UCUUCCCCcucgcgcGCCCCc -3'
miRNA:   3'- caaAGGGGGGccAGAAGGGG-------UGGGGu -5'
31230 3' -60.7 NC_006560.1 + 72300 0.66 0.69943
Target:  5'- ---gCCCCCCGaacc-CUCCGCCCCGg -3'
miRNA:   3'- caaaGGGGGGCcagaaGGGGUGGGGU- -5'
31230 3' -60.7 NC_006560.1 + 54065 0.66 0.69943
Target:  5'- --cUCgCCCC--UCUucUCCCCGCCCCc -3'
miRNA:   3'- caaAGgGGGGccAGA--AGGGGUGGGGu -5'
31230 3' -60.7 NC_006560.1 + 115309 0.66 0.69943
Target:  5'- ---aCCgCCCCGGUCgaCCUCugcaacggggACCCCGu -3'
miRNA:   3'- caaaGG-GGGGCCAGaaGGGG----------UGGGGU- -5'
31230 3' -60.7 NC_006560.1 + 8444 0.66 0.69943
Target:  5'- --aUCCCCCCcGUCccgccucgcggUUUCCACCCCc -3'
miRNA:   3'- caaAGGGGGGcCAGa----------AGGGGUGGGGu -5'
31230 3' -60.7 NC_006560.1 + 1757 0.66 0.69943
Target:  5'- --cUCCCCCCcucccccUCUcCCCCucuCCCCAa -3'
miRNA:   3'- caaAGGGGGGcc-----AGAaGGGGu--GGGGU- -5'
31230 3' -60.7 NC_006560.1 + 12471 0.66 0.69943
Target:  5'- ----aUCCCCGGagCgaggUCCCACCCCGa -3'
miRNA:   3'- caaagGGGGGCCa-Gaa--GGGGUGGGGU- -5'
31230 3' -60.7 NC_006560.1 + 120003 0.66 0.689656
Target:  5'- ----gCCCCCGGaggagagCCCCgACCCCGg -3'
miRNA:   3'- caaagGGGGGCCagaa---GGGG-UGGGGU- -5'
31230 3' -60.7 NC_006560.1 + 588 0.66 0.689656
Target:  5'- --cUCUCCCCGG-CUcCUCCGCgCCGc -3'
miRNA:   3'- caaAGGGGGGCCaGAaGGGGUGgGGU- -5'
31230 3' -60.7 NC_006560.1 + 11561 0.66 0.689656
Target:  5'- --gUCUCUUCGGUC-UCCCCgACCuCCGc -3'
miRNA:   3'- caaAGGGGGGCCAGaAGGGG-UGG-GGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.