miRNA display CGI


Results 1 - 20 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31230 5' -59 NC_006560.1 + 56208 0.66 0.77957
Target:  5'- gGCCCGaGGCGGuCGucuucgccgccGGCCGGcGCGAc--- -3'
miRNA:   3'- -UGGGC-CUGCC-GC-----------UCGGCC-CGUUauuu -5'
31230 5' -59 NC_006560.1 + 72237 0.66 0.77957
Target:  5'- -gCCGGuCGGCGAGggGGGCGGa--- -3'
miRNA:   3'- ugGGCCuGCCGCUCggCCCGUUauuu -5'
31230 5' -59 NC_006560.1 + 2545 0.66 0.77957
Target:  5'- -gCCGGA-GGCGAGCaCGGcGCGGc--- -3'
miRNA:   3'- ugGGCCUgCCGCUCG-GCC-CGUUauuu -5'
31230 5' -59 NC_006560.1 + 146579 0.66 0.77957
Target:  5'- -gCCGGAggcgccccCGGCGcccgaGGCCGGGCGc---- -3'
miRNA:   3'- ugGGCCU--------GCCGC-----UCGGCCCGUuauuu -5'
31230 5' -59 NC_006560.1 + 28414 0.66 0.77957
Target:  5'- gGCCgGGGCGGgcCGGGgCGGGCc----- -3'
miRNA:   3'- -UGGgCCUGCC--GCUCgGCCCGuuauuu -5'
31230 5' -59 NC_006560.1 + 57184 0.66 0.77957
Target:  5'- aACUCGGA-GGCGAGCgCGGcgGCGAcGAGg -3'
miRNA:   3'- -UGGGCCUgCCGCUCG-GCC--CGUUaUUU- -5'
31230 5' -59 NC_006560.1 + 79826 0.66 0.77957
Target:  5'- gGCgCCGGGCGGCGAuuucGgCGGcGCGGa--- -3'
miRNA:   3'- -UG-GGCCUGCCGCU----CgGCC-CGUUauuu -5'
31230 5' -59 NC_006560.1 + 102392 0.66 0.77865
Target:  5'- cGCCCGGGaggcccuCGGCG-GCCucGGGCGc---- -3'
miRNA:   3'- -UGGGCCU-------GCCGCuCGG--CCCGUuauuu -5'
31230 5' -59 NC_006560.1 + 51477 0.66 0.77865
Target:  5'- cGCgCGGGCGGCGgccccgaGGCCGaGGCc----- -3'
miRNA:   3'- -UGgGCCUGCCGC-------UCGGC-CCGuuauuu -5'
31230 5' -59 NC_006560.1 + 32660 0.66 0.770316
Target:  5'- cGCCCGG-CGGCG-GCaCGGGg------ -3'
miRNA:   3'- -UGGGCCuGCCGCuCG-GCCCguuauuu -5'
31230 5' -59 NC_006560.1 + 130290 0.66 0.770316
Target:  5'- gGCCCGGcgagaucuCGGCc-GCCGGcGCGGUGGc -3'
miRNA:   3'- -UGGGCCu-------GCCGcuCGGCC-CGUUAUUu -5'
31230 5' -59 NC_006560.1 + 25962 0.66 0.770316
Target:  5'- gGCCgCGGGgGGCGAggGCCgcgggGGGCGAg--- -3'
miRNA:   3'- -UGG-GCCUgCCGCU--CGG-----CCCGUUauuu -5'
31230 5' -59 NC_006560.1 + 67190 0.66 0.770316
Target:  5'- aGCCCGGAggcagacgaGGCGGGaCCGGGg------ -3'
miRNA:   3'- -UGGGCCUg--------CCGCUC-GGCCCguuauuu -5'
31230 5' -59 NC_006560.1 + 50954 0.66 0.770316
Target:  5'- gACCCGGggacucGCGGCGccccAGaCCGGGCc----- -3'
miRNA:   3'- -UGGGCC------UGCCGC----UC-GGCCCGuuauuu -5'
31230 5' -59 NC_006560.1 + 66943 0.66 0.770316
Target:  5'- cCCCGG--GGCGGGCCuuGGGCGc---- -3'
miRNA:   3'- uGGGCCugCCGCUCGG--CCCGUuauuu -5'
31230 5' -59 NC_006560.1 + 137090 0.66 0.770316
Target:  5'- cGCCCGGggcuggacGCGGCcaagcGGGCCcGGGCGu---- -3'
miRNA:   3'- -UGGGCC--------UGCCG-----CUCGG-CCCGUuauuu -5'
31230 5' -59 NC_006560.1 + 5100 0.66 0.770316
Target:  5'- cGCCCGGGguCGGCGggGGCgCGGcGuCGAUGAc -3'
miRNA:   3'- -UGGGCCU--GCCGC--UCG-GCC-C-GUUAUUu -5'
31230 5' -59 NC_006560.1 + 66749 0.66 0.760942
Target:  5'- cGCCCGGGUGGCGGa--GGGCGAg--- -3'
miRNA:   3'- -UGGGCCUGCCGCUcggCCCGUUauuu -5'
31230 5' -59 NC_006560.1 + 33810 0.66 0.760942
Target:  5'- gGCgCGGACGGgGGGCgGGGg------ -3'
miRNA:   3'- -UGgGCCUGCCgCUCGgCCCguuauuu -5'
31230 5' -59 NC_006560.1 + 77331 0.66 0.751456
Target:  5'- cCCCGGACGGaacGCCGcuGCAGUAc- -3'
miRNA:   3'- uGGGCCUGCCgcuCGGCc-CGUUAUuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.