miRNA display CGI


Results 1 - 20 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31230 5' -59 NC_006560.1 + 25449 0.85 0.066631
Target:  5'- gACCCGGACGGCGAGCCGG-CGGc--- -3'
miRNA:   3'- -UGGGCCUGCCGCUCGGCCcGUUauuu -5'
31230 5' -59 NC_006560.1 + 82615 0.82 0.107084
Target:  5'- cCCCGGACGGCG-GCUGGGCGGc--- -3'
miRNA:   3'- uGGGCCUGCCGCuCGGCCCGUUauuu -5'
31230 5' -59 NC_006560.1 + 122784 0.77 0.201998
Target:  5'- gGCCCGGAgcuuCGGCGGGuCCGGGgGGUAc- -3'
miRNA:   3'- -UGGGCCU----GCCGCUC-GGCCCgUUAUuu -5'
31230 5' -59 NC_006560.1 + 145821 0.77 0.212141
Target:  5'- cGCCCGGccucgcGCGGCGGGCCGGGgGc---- -3'
miRNA:   3'- -UGGGCC------UGCCGCUCGGCCCgUuauuu -5'
31230 5' -59 NC_006560.1 + 5155 0.77 0.217375
Target:  5'- gGCCCGGGCcggggccgcgggGGCGGGCCGcGGCGAc--- -3'
miRNA:   3'- -UGGGCCUG------------CCGCUCGGC-CCGUUauuu -5'
31230 5' -59 NC_006560.1 + 20906 0.77 0.222719
Target:  5'- uCCCGGGCGGUGGGCgCGGaGCGAg--- -3'
miRNA:   3'- uGGGCCUGCCGCUCG-GCC-CGUUauuu -5'
31230 5' -59 NC_006560.1 + 142111 0.76 0.251132
Target:  5'- uCCCGG-CaGCGAGCCGGGC-GUAAAc -3'
miRNA:   3'- uGGGCCuGcCGCUCGGCCCGuUAUUU- -5'
31230 5' -59 NC_006560.1 + 51973 0.76 0.257162
Target:  5'- gUCCGGGCGGCGGgcggcgggccuGCCGGcGCGGUGAc -3'
miRNA:   3'- uGGGCCUGCCGCU-----------CGGCC-CGUUAUUu -5'
31230 5' -59 NC_006560.1 + 39286 0.75 0.281811
Target:  5'- gACCCGGucuCGGCGgcguugugucccgGGCCGGGCGGg--- -3'
miRNA:   3'- -UGGGCCu--GCCGC-------------UCGGCCCGUUauuu -5'
31230 5' -59 NC_006560.1 + 133133 0.75 0.282467
Target:  5'- cCCCGGugGGCGgccuGGCCGcGGCAGc--- -3'
miRNA:   3'- uGGGCCugCCGC----UCGGC-CCGUUauuu -5'
31230 5' -59 NC_006560.1 + 146974 0.75 0.289094
Target:  5'- gGCCUGGGCgGGUGGGCgGGGCAu---- -3'
miRNA:   3'- -UGGGCCUG-CCGCUCGgCCCGUuauuu -5'
31230 5' -59 NC_006560.1 + 53011 0.74 0.302713
Target:  5'- cACCUGGACcGgGGGCCGGGCGGc--- -3'
miRNA:   3'- -UGGGCCUGcCgCUCGGCCCGUUauuu -5'
31230 5' -59 NC_006560.1 + 142537 0.74 0.302713
Target:  5'- cCCCGGGCccGGCG-GCCGGGCGc---- -3'
miRNA:   3'- uGGGCCUG--CCGCuCGGCCCGUuauuu -5'
31230 5' -59 NC_006560.1 + 144955 0.74 0.302713
Target:  5'- cCCCGGcCGGCGcGCCGGGCc----- -3'
miRNA:   3'- uGGGCCuGCCGCuCGGCCCGuuauuu -5'
31230 5' -59 NC_006560.1 + 3414 0.74 0.324059
Target:  5'- cGCCggcgggCGGGCGGCGGGCgCGGGCGc---- -3'
miRNA:   3'- -UGG------GCCUGCCGCUCG-GCCCGUuauuu -5'
31230 5' -59 NC_006560.1 + 28194 0.74 0.331418
Target:  5'- uCCCGGGcCGGCGGcCCGGGCGGg--- -3'
miRNA:   3'- uGGGCCU-GCCGCUcGGCCCGUUauuu -5'
31230 5' -59 NC_006560.1 + 32842 0.74 0.338147
Target:  5'- cACgCGGGCGGCGGGCagcccccCGGGCAGa--- -3'
miRNA:   3'- -UGgGCCUGCCGCUCG-------GCCCGUUauuu -5'
31230 5' -59 NC_006560.1 + 47861 0.73 0.35423
Target:  5'- gUCCGG-CGGCGGGCCGGGgGu---- -3'
miRNA:   3'- uGGGCCuGCCGCUCGGCCCgUuauuu -5'
31230 5' -59 NC_006560.1 + 57663 0.73 0.370042
Target:  5'- cACCCGGGCGGCGAggcgcgcccGCCgcgcguggguggGGGCGAa--- -3'
miRNA:   3'- -UGGGCCUGCCGCU---------CGG------------CCCGUUauuu -5'
31230 5' -59 NC_006560.1 + 15429 0.73 0.370042
Target:  5'- cCCCGGGCGGCGcGCCcGGCGc---- -3'
miRNA:   3'- uGGGCCUGCCGCuCGGcCCGUuauuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.