miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31231 5' -58.3 NC_006560.1 + 81184 0.66 0.774655
Target:  5'- -cGGCGGACauggCGCGGGUggggGCgCGACGGc -3'
miRNA:   3'- uuCUGCCUG----GCGUCCA----UGgGCUGCUa -5'
31231 5' -58.3 NC_006560.1 + 51980 0.66 0.774655
Target:  5'- -cGGCGGGCgGCGGGccUGCCgGcGCGGUg -3'
miRNA:   3'- uuCUGCCUGgCGUCC--AUGGgC-UGCUA- -5'
31231 5' -58.3 NC_006560.1 + 76355 0.67 0.765316
Target:  5'- gAAGACGcucCUGCGGGUGgcggcgauCCCGGCGAc -3'
miRNA:   3'- -UUCUGCcu-GGCGUCCAU--------GGGCUGCUa -5'
31231 5' -58.3 NC_006560.1 + 55431 0.67 0.765316
Target:  5'- cAGGGCGGAgCGCAGGcgggcgaGCCCGGgGc- -3'
miRNA:   3'- -UUCUGCCUgGCGUCCa------UGGGCUgCua -5'
31231 5' -58.3 NC_006560.1 + 112946 0.67 0.765316
Target:  5'- -cGACGGccucaugcGCCGCGcGGaGCUCGACGGUc -3'
miRNA:   3'- uuCUGCC--------UGGCGU-CCaUGGGCUGCUA- -5'
31231 5' -58.3 NC_006560.1 + 15776 0.67 0.765316
Target:  5'- cGGGCccggGGGCCgGCAGG-GCCCGGCGc- -3'
miRNA:   3'- uUCUG----CCUGG-CGUCCaUGGGCUGCua -5'
31231 5' -58.3 NC_006560.1 + 130254 0.67 0.764376
Target:  5'- -uGGCGGuggcgucgagcgaGCUGCAGGccuucuacggGCCCGGCGAg -3'
miRNA:   3'- uuCUGCC-------------UGGCGUCCa---------UGGGCUGCUa -5'
31231 5' -58.3 NC_006560.1 + 99478 0.67 0.755861
Target:  5'- cGGACGGGCgCGCc---GCCCGGCGGa -3'
miRNA:   3'- uUCUGCCUG-GCGuccaUGGGCUGCUa -5'
31231 5' -58.3 NC_006560.1 + 26529 0.67 0.746297
Target:  5'- uGGGCGGGCgcgCGCGGGgcCUCGugGGc -3'
miRNA:   3'- uUCUGCCUG---GCGUCCauGGGCugCUa -5'
31231 5' -58.3 NC_006560.1 + 9134 0.67 0.746297
Target:  5'- -cGAgGGcCCGCAGGUcUUCGGCGAc -3'
miRNA:   3'- uuCUgCCuGGCGUCCAuGGGCUGCUa -5'
31231 5' -58.3 NC_006560.1 + 3420 0.67 0.736636
Target:  5'- cGGGCGGGCgGCGGGcgcgggcGCCCG-CGGg -3'
miRNA:   3'- uUCUGCCUGgCGUCCa------UGGGCuGCUa -5'
31231 5' -58.3 NC_006560.1 + 11923 0.67 0.736636
Target:  5'- gAAGccGCGGGcCCGCAGGaggGgCCGGCGGg -3'
miRNA:   3'- -UUC--UGCCU-GGCGUCCa--UgGGCUGCUa -5'
31231 5' -58.3 NC_006560.1 + 13146 0.67 0.736636
Target:  5'- cAGGCGGA-CGUAGGUcCCCG-CGGUc -3'
miRNA:   3'- uUCUGCCUgGCGUCCAuGGGCuGCUA- -5'
31231 5' -58.3 NC_006560.1 + 16305 0.67 0.736636
Target:  5'- -cGGCGGGgCGCGGGcccgcGCCCG-CGAg -3'
miRNA:   3'- uuCUGCCUgGCGUCCa----UGGGCuGCUa -5'
31231 5' -58.3 NC_006560.1 + 43963 0.67 0.726884
Target:  5'- --cGCGGGCCcggGCGuGGUGCCCGACc-- -3'
miRNA:   3'- uucUGCCUGG---CGU-CCAUGGGCUGcua -5'
31231 5' -58.3 NC_006560.1 + 70510 0.67 0.726884
Target:  5'- -uGGCGa--CGCAGGUcucGCCCGACGGc -3'
miRNA:   3'- uuCUGCcugGCGUCCA---UGGGCUGCUa -5'
31231 5' -58.3 NC_006560.1 + 3089 0.67 0.726884
Target:  5'- cGGGCGGGCCGCAGcGcgcgGCCa-GCGAg -3'
miRNA:   3'- uUCUGCCUGGCGUC-Ca---UGGgcUGCUa -5'
31231 5' -58.3 NC_006560.1 + 3257 0.67 0.720994
Target:  5'- cGGGCGGcgcgcggcgccagccGCCGCGGGggucggGCCCGcCGGg -3'
miRNA:   3'- uUCUGCC---------------UGGCGUCCa-----UGGGCuGCUa -5'
31231 5' -58.3 NC_006560.1 + 41415 0.67 0.717052
Target:  5'- uGGACGGACaCGgAcuGGUACUCGugGGc -3'
miRNA:   3'- uUCUGCCUG-GCgU--CCAUGGGCugCUa -5'
31231 5' -58.3 NC_006560.1 + 25067 0.67 0.717052
Target:  5'- cGAGGCGGccGCCGCcGGcgcGCCCGACu-- -3'
miRNA:   3'- -UUCUGCC--UGGCGuCCa--UGGGCUGcua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.