miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31237 3' -56.9 NC_006560.1 + 84156 0.66 0.879191
Target:  5'- -cGaGUUCggGGGGCGGGUCugcaCCGCg -3'
miRNA:   3'- gaC-CAAGagCCCCGCUCGGuua-GGUG- -5'
31237 3' -56.9 NC_006560.1 + 17503 0.66 0.879191
Target:  5'- gCUGGagCgcgCGGGGCcGGCgGcgCCGCc -3'
miRNA:   3'- -GACCaaGa--GCCCCGcUCGgUuaGGUG- -5'
31237 3' -56.9 NC_006560.1 + 81662 0.66 0.879191
Target:  5'- gCUGGccaUCaUCGGGcGCGGGUCGAggccgacCCGCg -3'
miRNA:   3'- -GACCa--AG-AGCCC-CGCUCGGUUa------GGUG- -5'
31237 3' -56.9 NC_006560.1 + 134785 0.66 0.879191
Target:  5'- -aGGg--UCGGGGCG-GCgCGcUCCACg -3'
miRNA:   3'- gaCCaagAGCCCCGCuCG-GUuAGGUG- -5'
31237 3' -56.9 NC_006560.1 + 34803 0.66 0.879191
Target:  5'- -gGGUUC-CGcGGCGcGGCCGGggCCACg -3'
miRNA:   3'- gaCCAAGaGCcCCGC-UCGGUUa-GGUG- -5'
31237 3' -56.9 NC_006560.1 + 102410 0.66 0.879191
Target:  5'- -cGGc-CUCGGGcGCG-GCCGcggcGUCCGCc -3'
miRNA:   3'- gaCCaaGAGCCC-CGCuCGGU----UAGGUG- -5'
31237 3' -56.9 NC_006560.1 + 95080 0.66 0.871987
Target:  5'- gCUGGgcggacgUCgCGGGcCGGGCCGccgccgacGUCCGCg -3'
miRNA:   3'- -GACCa------AGaGCCCcGCUCGGU--------UAGGUG- -5'
31237 3' -56.9 NC_006560.1 + 12963 0.66 0.864569
Target:  5'- gCUGGUUCUCcggaugaaccuGGGGagcauGCCGgcggcGUCCACc -3'
miRNA:   3'- -GACCAAGAG-----------CCCCgcu--CGGU-----UAGGUG- -5'
31237 3' -56.9 NC_006560.1 + 44386 0.66 0.856943
Target:  5'- -cGGUcccgccCUCGGaGGCgGAGCCGcgucUCCGCg -3'
miRNA:   3'- gaCCAa-----GAGCC-CCG-CUCGGUu---AGGUG- -5'
31237 3' -56.9 NC_006560.1 + 130 0.66 0.849113
Target:  5'- -gGGUUUgggCGGGGCcGGCCccgccCCGCg -3'
miRNA:   3'- gaCCAAGa--GCCCCGcUCGGuua--GGUG- -5'
31237 3' -56.9 NC_006560.1 + 103071 0.66 0.849113
Target:  5'- -cGGUUCcgCGGGGaCGGGgggaCCGGUCC-Cg -3'
miRNA:   3'- gaCCAAGa-GCCCC-GCUC----GGUUAGGuG- -5'
31237 3' -56.9 NC_006560.1 + 27212 0.66 0.849113
Target:  5'- -cGGgaCcgCGGGGCGGGgCCGGgaCCGCg -3'
miRNA:   3'- gaCCaaGa-GCCCCGCUC-GGUUa-GGUG- -5'
31237 3' -56.9 NC_006560.1 + 150459 0.66 0.849113
Target:  5'- -gGGUUUgggCGGGGCcGGCCccgccCCGCg -3'
miRNA:   3'- gaCCAAGa--GCCCCGcUCGGuua--GGUG- -5'
31237 3' -56.9 NC_006560.1 + 55968 0.66 0.841088
Target:  5'- -gGGUgUUCGGGG-GGGCCccgGGUCCAg -3'
miRNA:   3'- gaCCAaGAGCCCCgCUCGG---UUAGGUg -5'
31237 3' -56.9 NC_006560.1 + 26839 0.66 0.841088
Target:  5'- -gGGgaCcCGGGGCGcGGCCGG-CCGCc -3'
miRNA:   3'- gaCCaaGaGCCCCGC-UCGGUUaGGUG- -5'
31237 3' -56.9 NC_006560.1 + 48276 0.66 0.841088
Target:  5'- gCUGGaacgaggaccuuUUUUCGGGGCuccccGCCAAUCC-Cg -3'
miRNA:   3'- -GACC------------AAGAGCCCCGcu---CGGUUAGGuG- -5'
31237 3' -56.9 NC_006560.1 + 31277 0.66 0.841088
Target:  5'- -cGGcucCUCGGGGCuccGCCGcUCCGCc -3'
miRNA:   3'- gaCCaa-GAGCCCCGcu-CGGUuAGGUG- -5'
31237 3' -56.9 NC_006560.1 + 137158 0.67 0.832872
Target:  5'- cCUGGcgCUCGGGGCGGagggcGCgGAgggCGCg -3'
miRNA:   3'- -GACCaaGAGCCCCGCU-----CGgUUag-GUG- -5'
31237 3' -56.9 NC_006560.1 + 35441 0.67 0.832872
Target:  5'- -cGGUUgC-CGGGGCGA-CCGG-CCGCg -3'
miRNA:   3'- gaCCAA-GaGCCCCGCUcGGUUaGGUG- -5'
31237 3' -56.9 NC_006560.1 + 78319 0.67 0.832872
Target:  5'- -cGGccCUCGGGccagcGCGuGCUggUCCGCg -3'
miRNA:   3'- gaCCaaGAGCCC-----CGCuCGGuuAGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.