miRNA display CGI


Results 1 - 20 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31237 5' -53.4 NC_006560.1 + 53584 0.66 0.972547
Target:  5'- cGGGCGcAG-CGCGCCC-GGGACGccggccGGGa -3'
miRNA:   3'- -CUCGUuUCuGUGCGGGgCUCUGU------UCC- -5'
31237 5' -53.4 NC_006560.1 + 54906 0.66 0.972547
Target:  5'- nGGGCGGuagccGAgGCGCUCgGGGGCcGGGg -3'
miRNA:   3'- -CUCGUUu----CUgUGCGGGgCUCUGuUCC- -5'
31237 5' -53.4 NC_006560.1 + 45620 0.66 0.972547
Target:  5'- -cGCGuccucGGCGCGCUUCGGGACGAacgcGGg -3'
miRNA:   3'- cuCGUuu---CUGUGCGGGGCUCUGUU----CC- -5'
31237 5' -53.4 NC_006560.1 + 80823 0.66 0.972547
Target:  5'- gGGGC-GGGGCGCGCCCgGAaccGCGccuAGGg -3'
miRNA:   3'- -CUCGuUUCUGUGCGGGgCUc--UGU---UCC- -5'
31237 5' -53.4 NC_006560.1 + 140360 0.66 0.972547
Target:  5'- cGGGCGucggcgcGGCGCGgCCCGAGGuccggucgucccCGGGGg -3'
miRNA:   3'- -CUCGUuu-----CUGUGCgGGGCUCU------------GUUCC- -5'
31237 5' -53.4 NC_006560.1 + 132325 0.66 0.972547
Target:  5'- cGGCcGGGGCGCacgcgGUCgCGGGGCGGGGg -3'
miRNA:   3'- cUCGuUUCUGUG-----CGGgGCUCUGUUCC- -5'
31237 5' -53.4 NC_006560.1 + 60654 0.66 0.972547
Target:  5'- gGGGC--AGACGCGCg--GGGGCGAGGg -3'
miRNA:   3'- -CUCGuuUCUGUGCGgggCUCUGUUCC- -5'
31237 5' -53.4 NC_006560.1 + 139882 0.66 0.972547
Target:  5'- uGAGCAGcaGCACGCCCCc--GCGGGc -3'
miRNA:   3'- -CUCGUUucUGUGCGGGGcucUGUUCc -5'
31237 5' -53.4 NC_006560.1 + 25769 0.66 0.972547
Target:  5'- -cGCAGAGcGCGCGCCggCCGcgucgaucGGAgGAGGg -3'
miRNA:   3'- cuCGUUUC-UGUGCGG--GGC--------UCUgUUCC- -5'
31237 5' -53.4 NC_006560.1 + 144377 0.66 0.972547
Target:  5'- cGGCAGGGGCgGCGUCCgCGGGcCGGcGGg -3'
miRNA:   3'- cUCGUUUCUG-UGCGGG-GCUCuGUU-CC- -5'
31237 5' -53.4 NC_006560.1 + 51830 0.66 0.969652
Target:  5'- gGAGCAGuccGAgcacuuccccccCGCGCCCCuGGGGCGcGGc -3'
miRNA:   3'- -CUCGUUu--CU------------GUGCGGGG-CUCUGUuCC- -5'
31237 5' -53.4 NC_006560.1 + 99746 0.66 0.969652
Target:  5'- gGGGCcccGACgACG-CCCGGGugGGGGg -3'
miRNA:   3'- -CUCGuuuCUG-UGCgGGGCUCugUUCC- -5'
31237 5' -53.4 NC_006560.1 + 77390 0.66 0.969652
Target:  5'- gGGGCGcugcuGAUGCGgCCCGAGGCGGc- -3'
miRNA:   3'- -CUCGUuu---CUGUGCgGGGCUCUGUUcc -5'
31237 5' -53.4 NC_006560.1 + 88929 0.66 0.969652
Target:  5'- -cGCucccGGGCGCGCUgCGAGGCccggccccGAGGg -3'
miRNA:   3'- cuCGuu--UCUGUGCGGgGCUCUG--------UUCC- -5'
31237 5' -53.4 NC_006560.1 + 108514 0.66 0.969652
Target:  5'- aGGGCGGccggcGGCGgGCCCgGGGGCGcgucGGGg -3'
miRNA:   3'- -CUCGUUu----CUGUgCGGGgCUCUGU----UCC- -5'
31237 5' -53.4 NC_006560.1 + 93523 0.66 0.969652
Target:  5'- cGGGCcgccGGAC-C-CCCCGGGuCAAGGa -3'
miRNA:   3'- -CUCGuu--UCUGuGcGGGGCUCuGUUCC- -5'
31237 5' -53.4 NC_006560.1 + 122835 0.66 0.969652
Target:  5'- cGAGCAcAAG-CugGCCgucaagaccauCCGGGACcGGGa -3'
miRNA:   3'- -CUCGU-UUCuGugCGG-----------GGCUCUGuUCC- -5'
31237 5' -53.4 NC_006560.1 + 26602 0.66 0.969652
Target:  5'- aGGCccagaAAGGACccGCGCCgCGGGGgGGGGg -3'
miRNA:   3'- cUCG-----UUUCUG--UGCGGgGCUCUgUUCC- -5'
31237 5' -53.4 NC_006560.1 + 32152 0.66 0.969652
Target:  5'- cGGGCGGGGccGgGCGuCCCCGGcGcCGAGGg -3'
miRNA:   3'- -CUCGUUUC--UgUGC-GGGGCU-CuGUUCC- -5'
31237 5' -53.4 NC_006560.1 + 21707 0.66 0.969652
Target:  5'- cGGCcgccccCGCGCCCCGGGGCGGa- -3'
miRNA:   3'- cUCGuuucu-GUGCGGGGCUCUGUUcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.