miRNA display CGI


Results 21 - 40 of 409 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31239 3' -68 NC_006560.1 + 38074 0.66 0.438152
Target:  5'- -gCCgGGCcccGGGGGUGUGucGGUgCCGCGGg -3'
miRNA:   3'- ggGGaCCG---CCCCCGCGC--UCG-GGCGCC- -5'
31239 3' -68 NC_006560.1 + 121922 0.66 0.438152
Target:  5'- gCCCCgcgGGaUGGaccgcGGGCcCGGGCgCGCGGc -3'
miRNA:   3'- -GGGGa--CC-GCC-----CCCGcGCUCGgGCGCC- -5'
31239 3' -68 NC_006560.1 + 145319 0.66 0.437331
Target:  5'- gCCCCc-GCGGGGGgcccucugcccccCGUGucCCUGCGGg -3'
miRNA:   3'- -GGGGacCGCCCCC-------------GCGCucGGGCGCC- -5'
31239 3' -68 NC_006560.1 + 9586 0.66 0.433239
Target:  5'- gCCCacgaGGCGcggcgagcggagcgcGGGGCGCG-GCCCcUGGg -3'
miRNA:   3'- gGGGa---CCGC---------------CCCCGCGCuCGGGcGCC- -5'
31239 3' -68 NC_006560.1 + 44333 0.66 0.429982
Target:  5'- gCUCUgcGGCuGGGGgGCGcGCCCcCGGg -3'
miRNA:   3'- gGGGA--CCGcCCCCgCGCuCGGGcGCC- -5'
31239 3' -68 NC_006560.1 + 25963 0.66 0.429982
Target:  5'- gCCgCggggGGCGagggccgcGGGGgGCGAgGgCCGCGGg -3'
miRNA:   3'- -GGgGa---CCGC--------CCCCgCGCU-CgGGCGCC- -5'
31239 3' -68 NC_006560.1 + 4626 0.66 0.429982
Target:  5'- gCCUCgucGGCGuccaGGGGCaCGGGCC-GCGGc -3'
miRNA:   3'- -GGGGa--CCGC----CCCCGcGCUCGGgCGCC- -5'
31239 3' -68 NC_006560.1 + 2186 0.66 0.429982
Target:  5'- gCCUCgGGCccGGcGCGCGcGGCCgCGCGGu -3'
miRNA:   3'- -GGGGaCCGccCC-CGCGC-UCGG-GCGCC- -5'
31239 3' -68 NC_006560.1 + 35664 0.66 0.429982
Target:  5'- uCCCCgggaggaggGGcCGcGGGGCGgggGAGCCgGgGGg -3'
miRNA:   3'- -GGGGa--------CC-GC-CCCCGCg--CUCGGgCgCC- -5'
31239 3' -68 NC_006560.1 + 102374 0.66 0.429982
Target:  5'- cCCCCgcGGCGGcGGC-CGcGCCCG-GGa -3'
miRNA:   3'- -GGGGa-CCGCCcCCGcGCuCGGGCgCC- -5'
31239 3' -68 NC_006560.1 + 54753 0.66 0.429982
Target:  5'- aCCC-GGCcccgcaGGGCGCGAggccccacGCCgCGCGGg -3'
miRNA:   3'- gGGGaCCGcc----CCCGCGCU--------CGG-GCGCC- -5'
31239 3' -68 NC_006560.1 + 23302 0.66 0.429982
Target:  5'- gCCCCU-GCuGGcGCGCGAGaacgccgCCGCGGc -3'
miRNA:   3'- -GGGGAcCGcCCcCGCGCUCg------GGCGCC- -5'
31239 3' -68 NC_006560.1 + 46087 0.66 0.429982
Target:  5'- gCCCgaGGC---GGCGCc-GCCCGCGGg -3'
miRNA:   3'- -GGGgaCCGcccCCGCGcuCGGGCGCC- -5'
31239 3' -68 NC_006560.1 + 128684 0.66 0.429982
Target:  5'- -aCggGGCGGGGGCGCgcucgGAGCCgGUc- -3'
miRNA:   3'- ggGgaCCGCCCCCGCG-----CUCGGgCGcc -5'
31239 3' -68 NC_006560.1 + 27216 0.66 0.429982
Target:  5'- aCCgCggGGC-GGGGC-CGGGaCCGCGGg -3'
miRNA:   3'- -GGgGa-CCGcCCCCGcGCUCgGGCGCC- -5'
31239 3' -68 NC_006560.1 + 74091 0.66 0.429982
Target:  5'- -aCCUGGCGGccuggcuGGCGUcgcuGGGCgacgCCGCGGg -3'
miRNA:   3'- ggGGACCGCCc------CCGCG----CUCG----GGCGCC- -5'
31239 3' -68 NC_006560.1 + 31817 0.66 0.429982
Target:  5'- aCCCguagggacGCGGGGGUG-GGGCUCGCc- -3'
miRNA:   3'- gGGGac------CGCCCCCGCgCUCGGGCGcc -5'
31239 3' -68 NC_006560.1 + 28415 0.66 0.429982
Target:  5'- gCCggGGCGGGccGGgGCGGGCCgaGgGGg -3'
miRNA:   3'- gGGgaCCGCCC--CCgCGCUCGGg-CgCC- -5'
31239 3' -68 NC_006560.1 + 4676 0.66 0.427548
Target:  5'- gCCCgUGGCGucgcgcccggccacGGcGGCGCGcGCgCgGCGGc -3'
miRNA:   3'- -GGGgACCGC--------------CC-CCGCGCuCG-GgCGCC- -5'
31239 3' -68 NC_006560.1 + 57325 0.66 0.421901
Target:  5'- aCCUCUcGGCGGu-GCGCGGGgcaggCCGCGGc -3'
miRNA:   3'- -GGGGA-CCGCCccCGCGCUCg----GGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.