miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31239 5' -55.8 NC_006560.1 + 86775 0.66 0.913784
Target:  5'- cCGaCGUGGGGUCga-G-CACCUugGCg -3'
miRNA:   3'- -GCgGCGCCCUAGaugCaGUGGAugUG- -5'
31239 5' -55.8 NC_006560.1 + 15268 0.66 0.913784
Target:  5'- aCGCCGgGGGcgCggucGCGggaGCCgGCGCg -3'
miRNA:   3'- -GCGGCgCCCuaGa---UGCag-UGGaUGUG- -5'
31239 5' -55.8 NC_006560.1 + 3580 0.66 0.913784
Target:  5'- uGCCGCGGG--CUGCGg-GCCaGCAg -3'
miRNA:   3'- gCGGCGCCCuaGAUGCagUGGaUGUg -5'
31239 5' -55.8 NC_006560.1 + 57886 0.66 0.913784
Target:  5'- -cCCGCGGG-UCUuccGCGUCcACCgccGCGCc -3'
miRNA:   3'- gcGGCGCCCuAGA---UGCAG-UGGa--UGUG- -5'
31239 5' -55.8 NC_006560.1 + 115279 0.66 0.913784
Target:  5'- aCGCaCGCGGGcaccGCGa-GCCUGCGCa -3'
miRNA:   3'- -GCG-GCGCCCuagaUGCagUGGAUGUG- -5'
31239 5' -55.8 NC_006560.1 + 45245 0.66 0.907803
Target:  5'- gGCCGgGGGG---GCGUCugUgGCGCg -3'
miRNA:   3'- gCGGCgCCCUagaUGCAGugGaUGUG- -5'
31239 5' -55.8 NC_006560.1 + 2077 0.66 0.907803
Target:  5'- gGCgGCGGGGUCcgggggcccgGCGUCGgC-GCGCa -3'
miRNA:   3'- gCGgCGCCCUAGa---------UGCAGUgGaUGUG- -5'
31239 5' -55.8 NC_006560.1 + 140502 0.66 0.907803
Target:  5'- gGCgGCGGGGgagaagggCUGCGgggccgcuucaUCGCCggGCGCg -3'
miRNA:   3'- gCGgCGCCCUa-------GAUGC-----------AGUGGa-UGUG- -5'
31239 5' -55.8 NC_006560.1 + 39068 0.66 0.901589
Target:  5'- uCGCCGCGGcg-CUGCGgccgaacgucUCGCUgACGCg -3'
miRNA:   3'- -GCGGCGCCcuaGAUGC----------AGUGGaUGUG- -5'
31239 5' -55.8 NC_006560.1 + 105046 0.66 0.900954
Target:  5'- cCGCCGCGGGGggggugcUCUGCuugCuCCU-CGCg -3'
miRNA:   3'- -GCGGCGCCCU-------AGAUGca-GuGGAuGUG- -5'
31239 5' -55.8 NC_006560.1 + 101323 0.67 0.895142
Target:  5'- gCGCCgcGCGGGcgCgacggcGCGUCccGCCUGgGCg -3'
miRNA:   3'- -GCGG--CGCCCuaGa-----UGCAG--UGGAUgUG- -5'
31239 5' -55.8 NC_006560.1 + 131871 0.67 0.895142
Target:  5'- gCGCUGCGGGGcgcggUCgcgGCGUacgcggagggCGCCgGCGCg -3'
miRNA:   3'- -GCGGCGCCCU-----AGa--UGCA----------GUGGaUGUG- -5'
31239 5' -55.8 NC_006560.1 + 117761 0.67 0.893164
Target:  5'- aGCC-CGGGGggCUGuucgucucgcucccCGUCGCCUGCGa -3'
miRNA:   3'- gCGGcGCCCUa-GAU--------------GCAGUGGAUGUg -5'
31239 5' -55.8 NC_006560.1 + 39619 0.67 0.888468
Target:  5'- gCGCCGCGGcGggCgucgGCGUC-CggGCGCg -3'
miRNA:   3'- -GCGGCGCC-CuaGa---UGCAGuGgaUGUG- -5'
31239 5' -55.8 NC_006560.1 + 23274 0.67 0.888468
Target:  5'- uCGCCGCcagc-CUGCGccgCGCCUACGCg -3'
miRNA:   3'- -GCGGCGcccuaGAUGCa--GUGGAUGUG- -5'
31239 5' -55.8 NC_006560.1 + 5096 0.67 0.887106
Target:  5'- gCGCCGCccGGGGUCggcgggggcgcgGCGUCgaugACCcACACc -3'
miRNA:   3'- -GCGGCG--CCCUAGa-----------UGCAG----UGGaUGUG- -5'
31239 5' -55.8 NC_006560.1 + 118843 0.67 0.881568
Target:  5'- aCGCCGCGGccg--AgGUCGCCUuugcgGCGCg -3'
miRNA:   3'- -GCGGCGCCcuagaUgCAGUGGA-----UGUG- -5'
31239 5' -55.8 NC_006560.1 + 22188 0.67 0.881568
Target:  5'- cCGCCGuCGGGGcCgcCGUCGCCgcgGCcCg -3'
miRNA:   3'- -GCGGC-GCCCUaGauGCAGUGGa--UGuG- -5'
31239 5' -55.8 NC_006560.1 + 18107 0.67 0.881568
Target:  5'- gGUCGCGGcGuUCUGCGUCcgggGCC-GCGCc -3'
miRNA:   3'- gCGGCGCC-CuAGAUGCAG----UGGaUGUG- -5'
31239 5' -55.8 NC_006560.1 + 11692 0.67 0.881568
Target:  5'- gGCgGgCGGGAUCgGCGUCGCggGgACg -3'
miRNA:   3'- gCGgC-GCCCUAGaUGCAGUGgaUgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.