Results 1 - 16 of 16 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3124 | 3' | -55.7 | NC_001493.1 | + | 4979 | 0.97 | 0.019267 |
Target: 5'- aCGACCCGAU-CCUUGGGAUAGCGACGa -3' miRNA: 3'- -GCUGGGCUAgGGAACCCUAUCGCUGC- -5' |
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3124 | 3' | -55.7 | NC_001493.1 | + | 9136 | 0.8 | 0.226819 |
Target: 5'- gCGACCgCGcUCCCg-GGGAUGGCGGCGa -3' miRNA: 3'- -GCUGG-GCuAGGGaaCCCUAUCGCUGC- -5' |
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3124 | 3' | -55.7 | NC_001493.1 | + | 21117 | 0.67 | 0.858034 |
Target: 5'- uCGcCCCuGucuUCCacgGGGAUGGCGGCGc -3' miRNA: 3'- -GCuGGG-Cu--AGGgaaCCCUAUCGCUGC- -5' |
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3124 | 3' | -55.7 | NC_001493.1 | + | 26452 | 0.67 | 0.858034 |
Target: 5'- gGACCCcaggGGUaUCCgucaGGGGUAGCGACu -3' miRNA: 3'- gCUGGG----CUA-GGGaa--CCCUAUCGCUGc -5' |
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3124 | 3' | -55.7 | NC_001493.1 | + | 28170 | 0.66 | 0.923987 |
Target: 5'- gGAgCCGAUCgC--GGGuuAUGGCGGCGg -3' miRNA: 3'- gCUgGGCUAGgGaaCCC--UAUCGCUGC- -5' |
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3124 | 3' | -55.7 | NC_001493.1 | + | 33667 | 0.71 | 0.694061 |
Target: 5'- aGACCCcaacUgCCUUGuGGGUGGUGGCGg -3' miRNA: 3'- gCUGGGcu--AgGGAAC-CCUAUCGCUGC- -5' |
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3124 | 3' | -55.7 | NC_001493.1 | + | 42005 | 0.7 | 0.753166 |
Target: 5'- -cGCCCGAUCCuCUUccaGGGAcUGGCGAa- -3' miRNA: 3'- gcUGGGCUAGG-GAA---CCCU-AUCGCUgc -5' |
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3124 | 3' | -55.7 | NC_001493.1 | + | 67542 | 0.68 | 0.8257 |
Target: 5'- gGACCCGAguaUCUUGGGAacacGGUGAuCGa -3' miRNA: 3'- gCUGGGCUag-GGAACCCUa---UCGCU-GC- -5' |
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3124 | 3' | -55.7 | NC_001493.1 | + | 87316 | 0.66 | 0.893184 |
Target: 5'- gGugCCGAUCCCg-GGGGUGaccauacGCGcGCGc -3' miRNA: 3'- gCugGGCUAGGGaaCCCUAU-------CGC-UGC- -5' |
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3124 | 3' | -55.7 | NC_001493.1 | + | 93261 | 0.67 | 0.885751 |
Target: 5'- aCGAUCCGAacgugcaUCCgCUcggcgcagggugcUGGGAUGGCuGCGa -3' miRNA: 3'- -GCUGGGCU-------AGG-GA-------------ACCCUAUCGcUGC- -5' |
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3124 | 3' | -55.7 | NC_001493.1 | + | 95475 | 0.69 | 0.762699 |
Target: 5'- aGACCCGuucaaCCCgaucGGGGaGGUGACGg -3' miRNA: 3'- gCUGGGCua---GGGaa--CCCUaUCGCUGC- -5' |
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3124 | 3' | -55.7 | NC_001493.1 | + | 107586 | 0.72 | 0.592312 |
Target: 5'- uGACaCCGGUCCCgggGGGGUGGcCGGa- -3' miRNA: 3'- gCUG-GGCUAGGGaa-CCCUAUC-GCUgc -5' |
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3124 | 3' | -55.7 | NC_001493.1 | + | 110594 | 0.72 | 0.613692 |
Target: 5'- uCGACCCGAggugcUCgCCgcgauguguggcggGGGGUGGCGACu -3' miRNA: 3'- -GCUGGGCU-----AG-GGaa------------CCCUAUCGCUGc -5' |
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3124 | 3' | -55.7 | NC_001493.1 | + | 113410 | 0.66 | 0.900341 |
Target: 5'- gCGACCgCGcGUCUCUUucGGGGUAGCucGCGg -3' miRNA: 3'- -GCUGG-GC-UAGGGAA--CCCUAUCGc-UGC- -5' |
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3124 | 3' | -55.7 | NC_001493.1 | + | 120533 | 1.1 | 0.002706 |
Target: 5'- aCGACCCGAUCCCUUGGGAUAGCGACGa -3' miRNA: 3'- -GCUGGGCUAGGGAACCCUAUCGCUGC- -5' |
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3124 | 3' | -55.7 | NC_001493.1 | + | 124691 | 0.8 | 0.226819 |
Target: 5'- gCGACCgCGcUCCCg-GGGAUGGCGGCGa -3' miRNA: 3'- -GCUGG-GCuAGGGaaCCCUAUCGCUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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