miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3124 5' -55 NC_001493.1 + 63519 0.69 0.792643
Target:  5'- -cCGGCG--AUGCCCGCGGG-AGCa- -3'
miRNA:   3'- cuGCUGUgaUACGGGUGCCCuUCGac -5'
3124 5' -55 NC_001493.1 + 63259 0.69 0.792643
Target:  5'- -cCGGCG--AUGCCCGCGGG-AGCg- -3'
miRNA:   3'- cuGCUGUgaUACGGGUGCCCuUCGac -5'
3124 5' -55 NC_001493.1 + 40190 0.69 0.77381
Target:  5'- --gGACGCUAUGUCaCACGcGGAucauccccgAGCUGa -3'
miRNA:   3'- cugCUGUGAUACGG-GUGC-CCU---------UCGAC- -5'
3124 5' -55 NC_001493.1 + 63642 0.69 0.754448
Target:  5'- -cCGGCG--AUGCCCACGGG-AGCg- -3'
miRNA:   3'- cuGCUGUgaUACGGGUGCCCuUCGac -5'
3124 5' -55 NC_001493.1 + 63349 0.69 0.754448
Target:  5'- -cCGGCG--AUGCCCACGGG-AGCg- -3'
miRNA:   3'- cuGCUGUgaUACGGGUGCCCuUCGac -5'
3124 5' -55 NC_001493.1 + 63393 0.69 0.754448
Target:  5'- -cCGGCG--AUGCCCACGGG-AGCg- -3'
miRNA:   3'- cuGCUGUgaUACGGGUGCCCuUCGac -5'
3124 5' -55 NC_001493.1 + 63438 0.69 0.754448
Target:  5'- -cCGGCG--AUGCCCACGGG-AGCg- -3'
miRNA:   3'- cuGCUGUgaUACGGGUGCCCuUCGac -5'
3124 5' -55 NC_001493.1 + 62763 0.7 0.714453
Target:  5'- cGACGGCGaa--GCCCGCGGGAgccaacGGCa- -3'
miRNA:   3'- -CUGCUGUgauaCGGGUGCCCU------UCGac -5'
3124 5' -55 NC_001493.1 + 62721 0.7 0.714453
Target:  5'- cGACGGCGaa--GCCCGCGGGAgccaacGGCa- -3'
miRNA:   3'- -CUGCUGUgauaCGGGUGCCCU------UCGac -5'
3124 5' -55 NC_001493.1 + 62679 0.7 0.714453
Target:  5'- cGACGGCGaa--GCCCGCGGGAgccaacGGCa- -3'
miRNA:   3'- -CUGCUGUgauaCGGGUGCCCU------UCGac -5'
3124 5' -55 NC_001493.1 + 62805 0.7 0.714453
Target:  5'- cGACGGCGaa--GCCCGCGGGAgccaacGGCa- -3'
miRNA:   3'- -CUGCUGUgauaCGGGUGCCCU------UCGac -5'
3124 5' -55 NC_001493.1 + 62973 0.7 0.704246
Target:  5'- cGACGGCGaa--GCCCACGGG-GGCg- -3'
miRNA:   3'- -CUGCUGUgauaCGGGUGCCCuUCGac -5'
3124 5' -55 NC_001493.1 + 63093 0.7 0.704246
Target:  5'- cGACGGCGaa--GCCCACGGG-AGCc- -3'
miRNA:   3'- -CUGCUGUgauaCGGGUGCCCuUCGac -5'
3124 5' -55 NC_001493.1 + 62889 0.7 0.704246
Target:  5'- cGACGGCGaa--GCCCACGGG-GGCg- -3'
miRNA:   3'- -CUGCUGUgauaCGGGUGCCCuUCGac -5'
3124 5' -55 NC_001493.1 + 62637 0.71 0.683652
Target:  5'- cGACGGCGaa--GCCCGCGGGAgccGGCc- -3'
miRNA:   3'- -CUGCUGUgauaCGGGUGCCCU---UCGac -5'
3124 5' -55 NC_001493.1 + 62847 0.71 0.673284
Target:  5'- cGACGGCGaa--GCCCACGGGAgccaacGGCa- -3'
miRNA:   3'- -CUGCUGUgauaCGGGUGCCCU------UCGac -5'
3124 5' -55 NC_001493.1 + 62931 0.71 0.673284
Target:  5'- cGACGGCGaa--GCCCACGGGAgccaacGGCa- -3'
miRNA:   3'- -CUGCUGUgauaCGGGUGCCCU------UCGac -5'
3124 5' -55 NC_001493.1 + 120869 0.71 0.642005
Target:  5'- cGGCuGcACGCUcgGCCCcggugacCGGGggGCUGg -3'
miRNA:   3'- -CUG-C-UGUGAuaCGGGu------GCCCuuCGAC- -5'
3124 5' -55 NC_001493.1 + 5315 0.71 0.642005
Target:  5'- cGGCuGcACGCUcgGCCCcggugacCGGGggGCUGg -3'
miRNA:   3'- -CUG-C-UGUGAuaCGGGu------GCCCuuCGAC- -5'
3124 5' -55 NC_001493.1 + 63015 0.72 0.610652
Target:  5'- cGACGGCGaa--GCCCACGGG-AGCg- -3'
miRNA:   3'- -CUGCUGUgauaCGGGUGCCCuUCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.