miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31240 3' -59.1 NC_006560.1 + 11907 0.65 0.799318
Target:  5'- cGACGACGG-CGuccgcgaagccgcGGGCCcGCaGGAGGg -3'
miRNA:   3'- aCUGCUGUCaGU-------------CCCGGaCGgCCUCU- -5'
31240 3' -59.1 NC_006560.1 + 88282 0.66 0.792228
Target:  5'- cGGCGACgcgccgcccgucgggGGUCAGGcccagcagcgugauGaCCgUGCCGGAGGg -3'
miRNA:   3'- aCUGCUG---------------UCAGUCC--------------C-GG-ACGGCCUCU- -5'
31240 3' -59.1 NC_006560.1 + 131627 0.66 0.791335
Target:  5'- cGGCGGCGGUCgAGcGcGCCcgcgccgcGCUGGAGGg -3'
miRNA:   3'- aCUGCUGUCAG-UC-C-CGGa-------CGGCCUCU- -5'
31240 3' -59.1 NC_006560.1 + 27277 0.66 0.791335
Target:  5'- cGGCcGCGGgggCGGGGCgCgggGCgCGGGGAg -3'
miRNA:   3'- aCUGcUGUCa--GUCCCG-Ga--CG-GCCUCU- -5'
31240 3' -59.1 NC_006560.1 + 147358 0.66 0.791335
Target:  5'- aGACGccgguCAGUCGGGGUggggggUGCgGGGGGg -3'
miRNA:   3'- aCUGCu----GUCAGUCCCGg-----ACGgCCUCU- -5'
31240 3' -59.1 NC_006560.1 + 53641 0.66 0.791335
Target:  5'- cGGCGGCucguuGcCGGGGCC-GCCcGGGAc -3'
miRNA:   3'- aCUGCUGu----CaGUCCCGGaCGGcCUCU- -5'
31240 3' -59.1 NC_006560.1 + 7652 0.66 0.790441
Target:  5'- gGGCGACcGUCGccccucuGGGCCgGCCGcgccccGAGAc -3'
miRNA:   3'- aCUGCUGuCAGU-------CCCGGaCGGC------CUCU- -5'
31240 3' -59.1 NC_006560.1 + 46365 0.66 0.788649
Target:  5'- -uGCGGCGGgcgCGGGGCCgaguacguguccgccCCGGGGGu -3'
miRNA:   3'- acUGCUGUCa--GUCCCGGac-------------GGCCUCU- -5'
31240 3' -59.1 NC_006560.1 + 136981 0.66 0.787751
Target:  5'- cGACGACAGcuucgucaagaccCAGGGCgagaUGCUGGuGGAg -3'
miRNA:   3'- aCUGCUGUCa------------GUCCCGg---ACGGCC-UCU- -5'
31240 3' -59.1 NC_006560.1 + 10290 0.66 0.782334
Target:  5'- -cGCGAgAGggggcGGGCC-GCCGGGGAc -3'
miRNA:   3'- acUGCUgUCagu--CCCGGaCGGCCUCU- -5'
31240 3' -59.1 NC_006560.1 + 81533 0.66 0.782334
Target:  5'- gUGGCGGCGcGcCAGGGCgUGCuCGGccgcgcgacAGAg -3'
miRNA:   3'- -ACUGCUGU-CaGUCCCGgACG-GCC---------UCU- -5'
31240 3' -59.1 NC_006560.1 + 132727 0.66 0.773203
Target:  5'- gGGCGGCGGgaagAGGGCCgucagGaUCGGGGGc -3'
miRNA:   3'- aCUGCUGUCag--UCCCGGa----C-GGCCUCU- -5'
31240 3' -59.1 NC_006560.1 + 58620 0.66 0.773203
Target:  5'- --uUGGCGGcCAGGGCCgccugGUCGGAc- -3'
miRNA:   3'- acuGCUGUCaGUCCCGGa----CGGCCUcu -5'
31240 3' -59.1 NC_006560.1 + 8797 0.66 0.76395
Target:  5'- -aACGACGGagGGGGC--GUCGGAGGg -3'
miRNA:   3'- acUGCUGUCagUCCCGgaCGGCCUCU- -5'
31240 3' -59.1 NC_006560.1 + 36171 0.66 0.758344
Target:  5'- gGAcCGGCGGacccccgguccgggcUCGGGGCUcgggGCCGGGGu -3'
miRNA:   3'- aCU-GCUGUC---------------AGUCCCGGa---CGGCCUCu -5'
31240 3' -59.1 NC_006560.1 + 55049 0.66 0.754585
Target:  5'- cGACGGaucGUCuGGGCgUcGCCGGGGc -3'
miRNA:   3'- aCUGCUgu-CAGuCCCGgA-CGGCCUCu -5'
31240 3' -59.1 NC_006560.1 + 46708 0.66 0.754585
Target:  5'- gUGACGACGGcCGGGcacccacuccGCC-GCCGGGc- -3'
miRNA:   3'- -ACUGCUGUCaGUCC----------CGGaCGGCCUcu -5'
31240 3' -59.1 NC_006560.1 + 1972 0.66 0.754585
Target:  5'- gGGCGGgGG-CGGGGCUcgggGCCGGGc- -3'
miRNA:   3'- aCUGCUgUCaGUCCCGGa---CGGCCUcu -5'
31240 3' -59.1 NC_006560.1 + 123468 0.66 0.754585
Target:  5'- cGugGACcucuacgcgcuGGggCAGGuCCUGCUGGAGGu -3'
miRNA:   3'- aCugCUG-----------UCa-GUCCcGGACGGCCUCU- -5'
31240 3' -59.1 NC_006560.1 + 12772 0.66 0.754585
Target:  5'- gGGCGGCAG-CuGGGCCgagacCgCGGGGAg -3'
miRNA:   3'- aCUGCUGUCaGuCCCGGac---G-GCCUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.