miRNA display CGI


Results 1 - 20 of 490 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31240 5' -66.1 NC_006560.1 + 76846 0.66 0.50901
Target:  5'- gGCCaagagcgCCGAgcGGGCgGGGGCCGUCgaggagauggGCGUg -3'
miRNA:   3'- gCGGa------GGCU--CCCG-CCCUGGCGG----------CGCG- -5'
31240 5' -66.1 NC_006560.1 + 69089 0.66 0.50901
Target:  5'- cCGcCCUCCu-GGGCucGGGcgaGCCGCCGUccGCc -3'
miRNA:   3'- -GC-GGAGGcuCCCG--CCC---UGGCGGCG--CG- -5'
31240 5' -66.1 NC_006560.1 + 118434 0.66 0.50901
Target:  5'- gCGCC-CCGGGGGCGaGG-UC-CUGgGCg -3'
miRNA:   3'- -GCGGaGGCUCCCGC-CCuGGcGGCgCG- -5'
31240 5' -66.1 NC_006560.1 + 49741 0.66 0.50901
Target:  5'- aCGCC-CCGGcGGuacGCGGcccacgcgcgcGAaacCCGCCGCGCg -3'
miRNA:   3'- -GCGGaGGCU-CC---CGCC-----------CU---GGCGGCGCG- -5'
31240 5' -66.1 NC_006560.1 + 24900 0.66 0.50901
Target:  5'- gCGCCUcuaccCCGAc-GCGccGCCGCCGCGCc -3'
miRNA:   3'- -GCGGA-----GGCUccCGCccUGGCGGCGCG- -5'
31240 5' -66.1 NC_006560.1 + 145149 0.66 0.50901
Target:  5'- cCGCCcCCcuGGGgGGGGCCGCacucccCGCc -3'
miRNA:   3'- -GCGGaGGcuCCCgCCCUGGCGgc----GCG- -5'
31240 5' -66.1 NC_006560.1 + 148255 0.66 0.50901
Target:  5'- gGCUgcggacgCgGAGuagcGCGGGGCCGCgaGCGCg -3'
miRNA:   3'- gCGGa------GgCUCc---CGCCCUGGCGg-CGCG- -5'
31240 5' -66.1 NC_006560.1 + 53457 0.66 0.50901
Target:  5'- gCGCCUCCuGucGGCGccgcccgaGGCCGCggcggCGCGCg -3'
miRNA:   3'- -GCGGAGG-CucCCGCc-------CUGGCG-----GCGCG- -5'
31240 5' -66.1 NC_006560.1 + 94317 0.66 0.50901
Target:  5'- gGCCaaCC-AGGGCGcGACCGUCGCccgGCg -3'
miRNA:   3'- gCGGa-GGcUCCCGCcCUGGCGGCG---CG- -5'
31240 5' -66.1 NC_006560.1 + 60047 0.66 0.50901
Target:  5'- uCGUCaCCGAccgcgGGGUGGacugcaccgaGGCCGCCGUGUu -3'
miRNA:   3'- -GCGGaGGCU-----CCCGCC----------CUGGCGGCGCG- -5'
31240 5' -66.1 NC_006560.1 + 92389 0.66 0.50901
Target:  5'- gGCCcUgGAGGcCGGGGCC-CgCGCGCu -3'
miRNA:   3'- gCGGaGgCUCCcGCCCUGGcG-GCGCG- -5'
31240 5' -66.1 NC_006560.1 + 62745 0.66 0.50901
Target:  5'- cCGCCgcaGGGGGUGGu-CCGCgGCGa -3'
miRNA:   3'- -GCGGaggCUCCCGCCcuGGCGgCGCg -5'
31240 5' -66.1 NC_006560.1 + 107007 0.66 0.50901
Target:  5'- gGCCUCCc-GGGCcugcgaGGGcCCGUCGCa- -3'
miRNA:   3'- gCGGAGGcuCCCG------CCCuGGCGGCGcg -5'
31240 5' -66.1 NC_006560.1 + 1635 0.66 0.50901
Target:  5'- gCGCCugUCUGu-GGCGGGGCCGggGCGUc -3'
miRNA:   3'- -GCGG--AGGCucCCGCCCUGGCggCGCG- -5'
31240 5' -66.1 NC_006560.1 + 118385 0.66 0.50901
Target:  5'- aGCCcCCGGGGGgcgggcgguuCGGGcCCGaCCccgggGCGCg -3'
miRNA:   3'- gCGGaGGCUCCC----------GCCCuGGC-GG-----CGCG- -5'
31240 5' -66.1 NC_006560.1 + 103099 0.66 0.506314
Target:  5'- cCGCCcCCGcGGacccggcggcggacGCGGGGgCGgCGCGCc -3'
miRNA:   3'- -GCGGaGGCuCC--------------CGCCCUgGCgGCGCG- -5'
31240 5' -66.1 NC_006560.1 + 28962 0.66 0.503624
Target:  5'- cCGCC-CCaacGGGGCGGGGauaugcugaugggaCGCCGCu- -3'
miRNA:   3'- -GCGGaGGc--UCCCGCCCUg-------------GCGGCGcg -5'
31240 5' -66.1 NC_006560.1 + 77228 0.66 0.503624
Target:  5'- uGCCggggcgaggcguacCUGAGGGCgagcggagacccGGGGCCccuggaGCUGCGCg -3'
miRNA:   3'- gCGGa-------------GGCUCCCG------------CCCUGG------CGGCGCG- -5'
31240 5' -66.1 NC_006560.1 + 80903 0.66 0.500047
Target:  5'- uCGCCggagaCCGAacGCGGGGCgcagccaguCGCCGgGCg -3'
miRNA:   3'- -GCGGa----GGCUccCGCCCUG---------GCGGCgCG- -5'
31240 5' -66.1 NC_006560.1 + 99802 0.66 0.500047
Target:  5'- gGCC-CCG-GGGCGuGGcCCGCCaccaGCu -3'
miRNA:   3'- gCGGaGGCuCCCGC-CCuGGCGGcg--CG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.