miRNA display CGI


Results 1 - 20 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31241 5' -54.2 NC_006560.1 + 34478 0.66 0.963905
Target:  5'- gCGGGC--GUGUGCGgGGAgccgggggUCGCGGCu -3'
miRNA:   3'- gGCCCGucUACAUGCgCUU--------GGCGUUG- -5'
31241 5' -54.2 NC_006560.1 + 26367 0.66 0.963905
Target:  5'- gCgGGGCGGAgacgGCGCcccGGCCGgGGCg -3'
miRNA:   3'- -GgCCCGUCUaca-UGCGc--UUGGCgUUG- -5'
31241 5' -54.2 NC_006560.1 + 103141 0.66 0.963905
Target:  5'- cCCGGGCGcccucUGCGCGucuucgucGCCGCGAg -3'
miRNA:   3'- -GGCCCGUcuac-AUGCGCu-------UGGCGUUg -5'
31241 5' -54.2 NC_006560.1 + 72620 0.66 0.963905
Target:  5'- gCCGGGCc-----GCGCGGcacGCCGCGAg -3'
miRNA:   3'- -GGCCCGucuacaUGCGCU---UGGCGUUg -5'
31241 5' -54.2 NC_006560.1 + 80105 0.66 0.963905
Target:  5'- -gGGGCGGGUGagccgACGgGcGCCGCu-- -3'
miRNA:   3'- ggCCCGUCUACa----UGCgCuUGGCGuug -5'
31241 5' -54.2 NC_006560.1 + 9879 0.66 0.963905
Target:  5'- aCCGGGgGGgcGgcacgcUGCGCGAgcagggcccguACCGCcGCa -3'
miRNA:   3'- -GGCCCgUCuaC------AUGCGCU-----------UGGCGuUG- -5'
31241 5' -54.2 NC_006560.1 + 7668 0.66 0.963568
Target:  5'- uCUGGGCcggccgcgccccgAGAcc-ACGCGA-CCGCGGCg -3'
miRNA:   3'- -GGCCCG-------------UCUacaUGCGCUuGGCGUUG- -5'
31241 5' -54.2 NC_006560.1 + 42737 0.66 0.962888
Target:  5'- gCCGGGgGcGUGUccGCguGCGAcuccguggcggccaGCCGCAGCa -3'
miRNA:   3'- -GGCCCgUcUACA--UG--CGCU--------------UGGCGUUG- -5'
31241 5' -54.2 NC_006560.1 + 18834 0.66 0.960438
Target:  5'- gUCGGGCGGcuc--CGCGAgGCCGCGu- -3'
miRNA:   3'- -GGCCCGUCuacauGCGCU-UGGCGUug -5'
31241 5' -54.2 NC_006560.1 + 33821 0.66 0.960438
Target:  5'- -gGGGCGGggGUcgGCGgGGgucgGCCGCGGg -3'
miRNA:   3'- ggCCCGUCuaCA--UGCgCU----UGGCGUUg -5'
31241 5' -54.2 NC_006560.1 + 139775 0.66 0.960438
Target:  5'- aCCgGGGCGcGAUGcg-GCGAGCCGacgGACg -3'
miRNA:   3'- -GG-CCCGU-CUACaugCGCUUGGCg--UUG- -5'
31241 5' -54.2 NC_006560.1 + 108688 0.66 0.960438
Target:  5'- gCCGGGCcgucGUcgaGgGgGGGCCGCGACa -3'
miRNA:   3'- -GGCCCGucuaCA---UgCgCUUGGCGUUG- -5'
31241 5' -54.2 NC_006560.1 + 143578 0.66 0.960438
Target:  5'- aCCGGGgAGGggggGUuCGCGAGCgagaggCGUGGCg -3'
miRNA:   3'- -GGCCCgUCUa---CAuGCGCUUG------GCGUUG- -5'
31241 5' -54.2 NC_006560.1 + 55903 0.66 0.960438
Target:  5'- gCGGGCGGAUGgagagggaggGCcgGCGGACCaugcGCAcccGCg -3'
miRNA:   3'- gGCCCGUCUACa---------UG--CGCUUGG----CGU---UG- -5'
31241 5' -54.2 NC_006560.1 + 52919 0.66 0.960438
Target:  5'- aCGGGCAGGUcugccgGCGCcuggaccccacGGGCCGCcgguGCg -3'
miRNA:   3'- gGCCCGUCUAca----UGCG-----------CUUGGCGu---UG- -5'
31241 5' -54.2 NC_006560.1 + 40112 0.66 0.960438
Target:  5'- gCCGGGCGGAgacuCGCGucguccauCUGCAuGCg -3'
miRNA:   3'- -GGCCCGUCUacauGCGCuu------GGCGU-UG- -5'
31241 5' -54.2 NC_006560.1 + 27285 0.66 0.960438
Target:  5'- -gGGGCGGG---GCGCGGGgCGCGGg -3'
miRNA:   3'- ggCCCGUCUacaUGCGCUUgGCGUUg -5'
31241 5' -54.2 NC_006560.1 + 87880 0.66 0.960079
Target:  5'- gCGGGUGGggGgGCGCGccgucccGGCCGCGc- -3'
miRNA:   3'- gGCCCGUCuaCaUGCGC-------UUGGCGUug -5'
31241 5' -54.2 NC_006560.1 + 34535 0.66 0.960079
Target:  5'- -gGGGCAGAggggggaugugUGUGCGgGggggcggccggggGugCGCGACg -3'
miRNA:   3'- ggCCCGUCU-----------ACAUGCgC-------------UugGCGUUG- -5'
31241 5' -54.2 NC_006560.1 + 110145 0.66 0.95825
Target:  5'- aCGGGcCGGcUGUAcgccccgcugugcguCGCGAgcGCCGUGGCg -3'
miRNA:   3'- gGCCC-GUCuACAU---------------GCGCU--UGGCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.