miRNA display CGI


Results 1 - 20 of 82 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31243 3' -55 NC_006560.1 + 25735 0.65 0.938264
Target:  5'- --aCGCcccgGCCCCgccacagacagGCGCGAAGCcCGCa -3'
miRNA:   3'- gagGCGa---UGGGGa----------UGUGCUUCGaGUG- -5'
31243 3' -55 NC_006560.1 + 129012 0.65 0.938264
Target:  5'- uUCUGCcGCuUCCUGCGCGgcGCgCACc -3'
miRNA:   3'- gAGGCGaUG-GGGAUGUGCuuCGaGUG- -5'
31243 3' -55 NC_006560.1 + 107943 0.65 0.938264
Target:  5'- uUCCGCgaacGCCCCg--ACGAAGgUgGCg -3'
miRNA:   3'- gAGGCGa---UGGGGaugUGCUUCgAgUG- -5'
31243 3' -55 NC_006560.1 + 71602 0.65 0.938264
Target:  5'- cCUCCGCgaUGCCCUgucgGC-CGAGGCcgUCGa -3'
miRNA:   3'- -GAGGCG--AUGGGGa---UGuGCUUCG--AGUg -5'
31243 3' -55 NC_006560.1 + 84681 0.65 0.938264
Target:  5'- -gCUGCUGCCCCgccugcgGCGCG-GGCgacgggCGCc -3'
miRNA:   3'- gaGGCGAUGGGGa------UGUGCuUCGa-----GUG- -5'
31243 3' -55 NC_006560.1 + 129047 0.65 0.938264
Target:  5'- cCUCCGggcccagcgGCCCCUcCGCG-AGCUgCGCg -3'
miRNA:   3'- -GAGGCga-------UGGGGAuGUGCuUCGA-GUG- -5'
31243 3' -55 NC_006560.1 + 84596 0.65 0.938264
Target:  5'- gUCgCGCUGCCCUUcgACcUGGAGCgCACc -3'
miRNA:   3'- gAG-GCGAUGGGGA--UGuGCUUCGaGUG- -5'
31243 3' -55 NC_006560.1 + 25526 0.65 0.938264
Target:  5'- -cCCGCgACCC--GCAauaaaaagaguCGAAGCUCGCa -3'
miRNA:   3'- gaGGCGaUGGGgaUGU-----------GCUUCGAGUG- -5'
31243 3' -55 NC_006560.1 + 24992 0.66 0.9333
Target:  5'- -gCCGCUGCCgCC-GCGCGAGuaccGC-CGCg -3'
miRNA:   3'- gaGGCGAUGG-GGaUGUGCUU----CGaGUG- -5'
31243 3' -55 NC_006560.1 + 3656 0.66 0.9333
Target:  5'- cCUCgGC-GCCgCCggggACGCGGAGgUCGCc -3'
miRNA:   3'- -GAGgCGaUGG-GGa---UGUGCUUCgAGUG- -5'
31243 3' -55 NC_006560.1 + 76273 0.66 0.928092
Target:  5'- -aCCGCgugacgGCcgCCCUGCGgGAGGCccUCGCg -3'
miRNA:   3'- gaGGCGa-----UG--GGGAUGUgCUUCG--AGUG- -5'
31243 3' -55 NC_006560.1 + 34508 0.66 0.928092
Target:  5'- gCUCCGgaGgCCg-GCACGggGCgCGCg -3'
miRNA:   3'- -GAGGCgaUgGGgaUGUGCuuCGaGUG- -5'
31243 3' -55 NC_006560.1 + 67213 0.66 0.928092
Target:  5'- -aCCGggGCCCCcuucGCGCG-AGCUCGu -3'
miRNA:   3'- gaGGCgaUGGGGa---UGUGCuUCGAGUg -5'
31243 3' -55 NC_006560.1 + 6865 0.66 0.928092
Target:  5'- -cCCGC-GCCCCUcCGCGcAGgaCACa -3'
miRNA:   3'- gaGGCGaUGGGGAuGUGCuUCgaGUG- -5'
31243 3' -55 NC_006560.1 + 29241 0.66 0.922638
Target:  5'- gCUCCGCcGCCCC-AgACGAccgucGGCcCGCc -3'
miRNA:   3'- -GAGGCGaUGGGGaUgUGCU-----UCGaGUG- -5'
31243 3' -55 NC_006560.1 + 16942 0.66 0.922638
Target:  5'- -aCCaGgaGCCCC-GCGCGAAGCagGCg -3'
miRNA:   3'- gaGG-CgaUGGGGaUGUGCUUCGagUG- -5'
31243 3' -55 NC_006560.1 + 22506 0.66 0.922638
Target:  5'- -gCCGCcGCCgCCgucgACGCGAAcCUCGCc -3'
miRNA:   3'- gaGGCGaUGG-GGa---UGUGCUUcGAGUG- -5'
31243 3' -55 NC_006560.1 + 9698 0.66 0.91694
Target:  5'- uUCCGgUACCUCgcCGCGguGCUgACg -3'
miRNA:   3'- gAGGCgAUGGGGauGUGCuuCGAgUG- -5'
31243 3' -55 NC_006560.1 + 105294 0.66 0.91694
Target:  5'- -aCCGC-GCCCCUGCucCGGugggcGGCUcCGCg -3'
miRNA:   3'- gaGGCGaUGGGGAUGu-GCU-----UCGA-GUG- -5'
31243 3' -55 NC_006560.1 + 23869 0.66 0.91694
Target:  5'- -cCUGCgcCCCCUGCugGAcGC-CGCc -3'
miRNA:   3'- gaGGCGauGGGGAUGugCUuCGaGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.