miRNA display CGI


Results 21 - 40 of 363 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31244 5' -67.8 NC_006560.1 + 39935 0.66 0.434754
Target:  5'- gGGUGGCUgGGgCCCGUCgGuaGGCgGGGc -3'
miRNA:   3'- -CCGCUGAgCCgGGGCGGgC--CCGgCCU- -5'
31244 5' -67.8 NC_006560.1 + 122074 0.66 0.434754
Target:  5'- uGGCGGCcaaggCGGCCCa--CCGGGaguUGGAg -3'
miRNA:   3'- -CCGCUGa----GCCGGGgcgGGCCCg--GCCU- -5'
31244 5' -67.8 NC_006560.1 + 145500 0.66 0.434754
Target:  5'- gGGgGGCUCuGUCCCcugcucuCCCGGGCgGGc -3'
miRNA:   3'- -CCgCUGAGcCGGGGc------GGGCCCGgCCu -5'
31244 5' -67.8 NC_006560.1 + 97395 0.66 0.433933
Target:  5'- gGGCGACcccggggaggCGGCCaC-CCCGGGCCccuccguGGAc -3'
miRNA:   3'- -CCGCUGa---------GCCGGgGcGGGCCCGG-------CCU- -5'
31244 5' -67.8 NC_006560.1 + 59464 0.66 0.426584
Target:  5'- gGGCGGC-CGGCCgaaCgCGGGCgGGAg -3'
miRNA:   3'- -CCGCUGaGCCGGggcGgGCCCGgCCU- -5'
31244 5' -67.8 NC_006560.1 + 146574 0.66 0.426584
Target:  5'- cGCGAgcCggaGGCgCCCccggcGCCCGaGGCCGGGc -3'
miRNA:   3'- cCGCU--Gag-CCG-GGG-----CGGGC-CCGGCCU- -5'
31244 5' -67.8 NC_006560.1 + 93859 0.66 0.426584
Target:  5'- cGGCGGC---GCCUgCGCCCGgGGCUGGc -3'
miRNA:   3'- -CCGCUGagcCGGG-GCGGGC-CCGGCCu -5'
31244 5' -67.8 NC_006560.1 + 71505 0.66 0.426584
Target:  5'- gGGCGAggaaccagUUCGcCCCCGaCCUGGaGcCCGGAg -3'
miRNA:   3'- -CCGCU--------GAGCcGGGGC-GGGCC-C-GGCCU- -5'
31244 5' -67.8 NC_006560.1 + 11920 0.66 0.426584
Target:  5'- cGCGAagccgCGGgCCCGCaggagGGGCCGGc -3'
miRNA:   3'- cCGCUga---GCCgGGGCGgg---CCCGGCCu -5'
31244 5' -67.8 NC_006560.1 + 121947 0.66 0.426584
Target:  5'- gGGCG-CgCGGCUCUGCgCCGGcGCCuGGc -3'
miRNA:   3'- -CCGCuGaGCCGGGGCG-GGCC-CGG-CCu -5'
31244 5' -67.8 NC_006560.1 + 147542 0.66 0.426584
Target:  5'- cGGUGACgggcUGGCCCaUGCgggCGGGCgGGGa -3'
miRNA:   3'- -CCGCUGa---GCCGGG-GCGg--GCCCGgCCU- -5'
31244 5' -67.8 NC_006560.1 + 75104 0.66 0.426584
Target:  5'- gGGCGAUcgcgCGGCUCgggGCCCuggGGGCCGcGGc -3'
miRNA:   3'- -CCGCUGa---GCCGGGg--CGGG---CCCGGC-CU- -5'
31244 5' -67.8 NC_006560.1 + 144131 0.66 0.426584
Target:  5'- cGGCGGCcgcggCGGCgCCCcCCCGGcUCGGc -3'
miRNA:   3'- -CCGCUGa----GCCG-GGGcGGGCCcGGCCu -5'
31244 5' -67.8 NC_006560.1 + 4807 0.66 0.426584
Target:  5'- -cCGAgUCggGGUCCgaGCCCGGGuCCGGGu -3'
miRNA:   3'- ccGCUgAG--CCGGGg-CGGGCCC-GGCCU- -5'
31244 5' -67.8 NC_006560.1 + 89941 0.66 0.426584
Target:  5'- gGGUu-CUCGGCCCaCGCgCCGcGGCCc-- -3'
miRNA:   3'- -CCGcuGAGCCGGG-GCG-GGC-CCGGccu -5'
31244 5' -67.8 NC_006560.1 + 65966 0.66 0.425772
Target:  5'- gGGCGGCgcggugCGGCgccucgaCCUGCCCGGGagagcaCCGuGGg -3'
miRNA:   3'- -CCGCUGa-----GCCG-------GGGCGGGCCC------GGC-CU- -5'
31244 5' -67.8 NC_006560.1 + 25171 0.66 0.425772
Target:  5'- uGGCGcuggaccGCgCGGCCgCgCGCgCCGGGCCcGAg -3'
miRNA:   3'- -CCGC-------UGaGCCGG-G-GCG-GGCCCGGcCU- -5'
31244 5' -67.8 NC_006560.1 + 97614 0.66 0.418506
Target:  5'- cGGCGccaucgcCUCGGCCaCCGUCgGccGCCGGGu -3'
miRNA:   3'- -CCGCu------GAGCCGG-GGCGGgCc-CGGCCU- -5'
31244 5' -67.8 NC_006560.1 + 91253 0.66 0.418506
Target:  5'- cGcCGACgUGGCCgagaCgGCCCGGGCCGu- -3'
miRNA:   3'- cC-GCUGaGCCGG----GgCGGGCCCGGCcu -5'
31244 5' -67.8 NC_006560.1 + 71776 0.66 0.418506
Target:  5'- cGGCGAgguggcuuucUUCGGCCa-GCCCucGCCGGGc -3'
miRNA:   3'- -CCGCU----------GAGCCGGggCGGGccCGGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.