miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31245 3' -53.4 NC_006560.1 + 84254 0.66 0.975446
Target:  5'- uCGUGCGcGA-GGcCGGCGCGcugCUCCg -3'
miRNA:   3'- -GUACGU-CUaCCuGCUGCGCucaGAGG- -5'
31245 3' -53.4 NC_006560.1 + 53045 0.66 0.973874
Target:  5'- cCAUGCAGugcauggcccugcGGGCGGCcgucuGCGAcGUCUUCg -3'
miRNA:   3'- -GUACGUCua-----------CCUGCUG-----CGCU-CAGAGG- -5'
31245 3' -53.4 NC_006560.1 + 85589 0.66 0.972786
Target:  5'- --cGCGGcgGGcGCGGCGuCGAG-CUCg -3'
miRNA:   3'- guaCGUCuaCC-UGCUGC-GCUCaGAGg -5'
31245 3' -53.4 NC_006560.1 + 102236 0.66 0.966852
Target:  5'- aCGUGCcGAa-GACGACGCcGGUCgagCCg -3'
miRNA:   3'- -GUACGuCUacCUGCUGCGcUCAGa--GG- -5'
31245 3' -53.4 NC_006560.1 + 39221 0.66 0.966852
Target:  5'- gCGUGUcgGGAgGGGCGAcCGCGAG-CgCCa -3'
miRNA:   3'- -GUACG--UCUaCCUGCU-GCGCUCaGaGG- -5'
31245 3' -53.4 NC_006560.1 + 110198 0.66 0.966852
Target:  5'- --cGUGGcGUGGAUcGCGCGGGcgCUCCu -3'
miRNA:   3'- guaCGUC-UACCUGcUGCGCUCa-GAGG- -5'
31245 3' -53.4 NC_006560.1 + 99942 0.66 0.963565
Target:  5'- --gGCGGAcgGGAgGGCGCGGGUacgcggugcgCCg -3'
miRNA:   3'- guaCGUCUa-CCUgCUGCGCUCAga--------GG- -5'
31245 3' -53.4 NC_006560.1 + 33823 0.66 0.963565
Target:  5'- --gGCGGG-GGuCGGCGgGGGUCggCCg -3'
miRNA:   3'- guaCGUCUaCCuGCUGCgCUCAGa-GG- -5'
31245 3' -53.4 NC_006560.1 + 109609 0.66 0.963224
Target:  5'- uGUGCAGGUGGGCGuguCGCcccgaggGAGaCcCCg -3'
miRNA:   3'- gUACGUCUACCUGCu--GCG-------CUCaGaGG- -5'
31245 3' -53.4 NC_006560.1 + 114857 0.67 0.960057
Target:  5'- --aGCGGGgagGGGCGgagacGCGCGGGggucgccgCUCCc -3'
miRNA:   3'- guaCGUCUa--CCUGC-----UGCGCUCa-------GAGG- -5'
31245 3' -53.4 NC_006560.1 + 74193 0.67 0.956323
Target:  5'- --aGCGGGUGGuGCGGCG-GAG-CUCg -3'
miRNA:   3'- guaCGUCUACC-UGCUGCgCUCaGAGg -5'
31245 3' -53.4 NC_006560.1 + 86505 0.67 0.956323
Target:  5'- gCGUGCuc-UGGGgGAUGCGGGaacgaaUCUCCu -3'
miRNA:   3'- -GUACGucuACCUgCUGCGCUC------AGAGG- -5'
31245 3' -53.4 NC_006560.1 + 68725 0.67 0.956323
Target:  5'- ---cCAGAgcgUGGACGACGCGAcgCUCa -3'
miRNA:   3'- guacGUCU---ACCUGCUGCGCUcaGAGg -5'
31245 3' -53.4 NC_006560.1 + 40929 0.67 0.956323
Target:  5'- --cGCGGcgGGGuccCGCGGGUCUUCg -3'
miRNA:   3'- guaCGUCuaCCUgcuGCGCUCAGAGG- -5'
31245 3' -53.4 NC_006560.1 + 139598 0.67 0.956323
Target:  5'- --aGUcGAUGGGCGcgaGCGAGcgCUCCc -3'
miRNA:   3'- guaCGuCUACCUGCug-CGCUCa-GAGG- -5'
31245 3' -53.4 NC_006560.1 + 124437 0.67 0.952359
Target:  5'- --cGgGGAUGGuCGAuCGCG-GUCUCg -3'
miRNA:   3'- guaCgUCUACCuGCU-GCGCuCAGAGg -5'
31245 3' -53.4 NC_006560.1 + 71651 0.67 0.952359
Target:  5'- --gGCGGGgcGugGACGCGGGcCUCg -3'
miRNA:   3'- guaCGUCUacCugCUGCGCUCaGAGg -5'
31245 3' -53.4 NC_006560.1 + 102053 0.67 0.948159
Target:  5'- --gGCAGA-GGACGGCGCacucGAGgg-CCg -3'
miRNA:   3'- guaCGUCUaCCUGCUGCG----CUCagaGG- -5'
31245 3' -53.4 NC_006560.1 + 80861 0.67 0.948159
Target:  5'- --cGCGGGcUGGGCGGCGgGGG-CggCCa -3'
miRNA:   3'- guaCGUCU-ACCUGCUGCgCUCaGa-GG- -5'
31245 3' -53.4 NC_006560.1 + 147841 0.67 0.943722
Target:  5'- gGUGCAGGcaggGGaagGCGGCGCagagcuGGGUCUCg -3'
miRNA:   3'- gUACGUCUa---CC---UGCUGCG------CUCAGAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.