miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31245 3' -53.4 NC_006560.1 + 16110 0.76 0.565734
Target:  5'- aCcgGCGGAUGGGgGGCGCGAGcagggCCa -3'
miRNA:   3'- -GuaCGUCUACCUgCUGCGCUCaga--GG- -5'
31245 3' -53.4 NC_006560.1 + 83670 0.73 0.689383
Target:  5'- --cGCAGAgc-GCGGCGCGGGgCUCCg -3'
miRNA:   3'- guaCGUCUaccUGCUGCGCUCaGAGG- -5'
31245 3' -53.4 NC_006560.1 + 94690 0.73 0.699578
Target:  5'- -cUGaCGGAgcUGGcGCGGCGCGAG-CUCCg -3'
miRNA:   3'- guAC-GUCU--ACC-UGCUGCGCUCaGAGG- -5'
31245 3' -53.4 NC_006560.1 + 72275 0.73 0.699578
Target:  5'- --cGCGGG-GGGCGACGuCGAGacCUCCg -3'
miRNA:   3'- guaCGUCUaCCUGCUGC-GCUCa-GAGG- -5'
31245 3' -53.4 NC_006560.1 + 39866 0.72 0.739684
Target:  5'- gCAUGUccAGGUcGGcggccaucGCGAgGCGGGUCUCCg -3'
miRNA:   3'- -GUACG--UCUA-CC--------UGCUgCGCUCAGAGG- -5'
31245 3' -53.4 NC_006560.1 + 55092 0.72 0.778254
Target:  5'- uGUGCGGccgGGGCGGCGCcgccUCUCCg -3'
miRNA:   3'- gUACGUCua-CCUGCUGCGcuc-AGAGG- -5'
31245 3' -53.4 NC_006560.1 + 130427 0.71 0.787585
Target:  5'- --cGCgAGGUGGGCGGCGCGccccUCUUCg -3'
miRNA:   3'- guaCG-UCUACCUGCUGCGCuc--AGAGG- -5'
31245 3' -53.4 NC_006560.1 + 4761 0.71 0.796774
Target:  5'- --cGCGGcgGcGGCGGCGCGGGg-UCCg -3'
miRNA:   3'- guaCGUCuaC-CUGCUGCGCUCagAGG- -5'
31245 3' -53.4 NC_006560.1 + 130751 0.71 0.796774
Target:  5'- cCGUGCGGAaGGAgGGCGCG-GUCg-- -3'
miRNA:   3'- -GUACGUCUaCCUgCUGCGCuCAGagg -5'
31245 3' -53.4 NC_006560.1 + 39623 0.71 0.809379
Target:  5'- --cGCGGcgGGcgucggcguccgggcGCGGCG-GAGUCUCCg -3'
miRNA:   3'- guaCGUCuaCC---------------UGCUGCgCUCAGAGG- -5'
31245 3' -53.4 NC_006560.1 + 134782 0.71 0.814685
Target:  5'- --cGCAGGgucgGGGCGGCGCG---CUCCa -3'
miRNA:   3'- guaCGUCUa---CCUGCUGCGCucaGAGG- -5'
31245 3' -53.4 NC_006560.1 + 135751 0.71 0.82339
Target:  5'- gCGUGguGAcggGGGCGACGCGGaUCgcggCCc -3'
miRNA:   3'- -GUACguCUa--CCUGCUGCGCUcAGa---GG- -5'
31245 3' -53.4 NC_006560.1 + 52905 0.7 0.831917
Target:  5'- gGUGCAGAcGGcCGACGgGcaGGUCUgCCg -3'
miRNA:   3'- gUACGUCUaCCuGCUGCgC--UCAGA-GG- -5'
31245 3' -53.4 NC_006560.1 + 73971 0.7 0.848407
Target:  5'- gCGUGCGGGaGGugGCGGCGCGGG-C-CCg -3'
miRNA:   3'- -GUACGUCUaCC--UGCUGCGCUCaGaGG- -5'
31245 3' -53.4 NC_006560.1 + 45894 0.7 0.848407
Target:  5'- --aGCucaccggGGGCGACcgGCGGGUCUCCc -3'
miRNA:   3'- guaCGucua---CCUGCUG--CGCUCAGAGG- -5'
31245 3' -53.4 NC_006560.1 + 137250 0.7 0.856354
Target:  5'- --cGCGGGcggcGGGCGACGCcGAGUUcCCg -3'
miRNA:   3'- guaCGUCUa---CCUGCUGCG-CUCAGaGG- -5'
31245 3' -53.4 NC_006560.1 + 94808 0.7 0.871619
Target:  5'- --cGCGGAcaUGGugGACGCG---CUCCu -3'
miRNA:   3'- guaCGUCU--ACCugCUGCGCucaGAGG- -5'
31245 3' -53.4 NC_006560.1 + 12944 0.69 0.886006
Target:  5'- -cUGUAGAcGGccACGACGCGcuGGuUCUCCg -3'
miRNA:   3'- guACGUCUaCC--UGCUGCGC--UC-AGAGG- -5'
31245 3' -53.4 NC_006560.1 + 99493 0.69 0.892858
Target:  5'- cCcgGCGGAguccgGGGCGAaGCGGGgcgcgcgcgccUCUCCg -3'
miRNA:   3'- -GuaCGUCUa----CCUGCUgCGCUC-----------AGAGG- -5'
31245 3' -53.4 NC_006560.1 + 128672 0.69 0.905855
Target:  5'- uCGUGUAuAUGGACGGgGCGGGggcgcgCUCg -3'
miRNA:   3'- -GUACGUcUACCUGCUgCGCUCa-----GAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.