miRNA display CGI


Results 1 - 20 of 777 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31245 5' -68.5 NC_006560.1 + 68207 0.65 0.412967
Target:  5'- gCGcGCGCCCaguggCGCCCCCugCuggagagGCucuGCGCCc -3'
miRNA:   3'- -GCcCGCGGG-----GCGGGGGugG-------CG---UGCGG- -5'
31245 5' -68.5 NC_006560.1 + 111018 0.66 0.409001
Target:  5'- uCGaGGUGCaCCaGCCCCUcaucgcccgggacggACCGCACcCCg -3'
miRNA:   3'- -GC-CCGCG-GGgCGGGGG---------------UGGCGUGcGG- -5'
31245 5' -68.5 NC_006560.1 + 91355 0.66 0.406633
Target:  5'- gGcGGUGCCCacgucgcuggccaaGCUcgagaccaucaucaCCCACCGCgACGCCc -3'
miRNA:   3'- gC-CCGCGGGg-------------CGG--------------GGGUGGCG-UGCGG- -5'
31245 5' -68.5 NC_006560.1 + 145875 0.66 0.405845
Target:  5'- gCGcGGCGagccccacCCCCGCguCCCUACgGguCGCCc -3'
miRNA:   3'- -GC-CCGC--------GGGGCG--GGGGUGgCguGCGG- -5'
31245 5' -68.5 NC_006560.1 + 89523 0.66 0.405845
Target:  5'- gCGGGaGCagCGaCCCCGgcacCCGCGCGCCc -3'
miRNA:   3'- -GCCCgCGggGCgGGGGU----GGCGUGCGG- -5'
31245 5' -68.5 NC_006560.1 + 27158 0.66 0.405845
Target:  5'- gCGGGCcggGCCCU-CCCgCgGCgGCGCGCg -3'
miRNA:   3'- -GCCCG---CGGGGcGGG-GgUGgCGUGCGg -5'
31245 5' -68.5 NC_006560.1 + 73846 0.66 0.405845
Target:  5'- gGGGCGCgUguacagCGCCaaggCGCUGCugGCCg -3'
miRNA:   3'- gCCCGCGgG------GCGGgg--GUGGCGugCGG- -5'
31245 5' -68.5 NC_006560.1 + 118397 0.66 0.405845
Target:  5'- gCGGGCGguucgggCCCGaCCCCggggcgcggcUACCGCGCcCCg -3'
miRNA:   3'- -GCCCGCg------GGGC-GGGG----------GUGGCGUGcGG- -5'
31245 5' -68.5 NC_006560.1 + 31353 0.66 0.405845
Target:  5'- -cGGC-CCCCG-CCCCGCCGagcggGgGCCg -3'
miRNA:   3'- gcCCGcGGGGCgGGGGUGGCg----UgCGG- -5'
31245 5' -68.5 NC_006560.1 + 35148 0.66 0.405845
Target:  5'- -cGGCGgCCCGCgUCCGaCGCGCccgGCCg -3'
miRNA:   3'- gcCCGCgGGGCGgGGGUgGCGUG---CGG- -5'
31245 5' -68.5 NC_006560.1 + 93058 0.66 0.405845
Target:  5'- gCGGcgcacGCGCCCgGCgCCCgaaagaggGCCG-GCGCCa -3'
miRNA:   3'- -GCC-----CGCGGGgCGgGGG--------UGGCgUGCGG- -5'
31245 5' -68.5 NC_006560.1 + 7265 0.66 0.405845
Target:  5'- gCGuGCGCCgCCGaCCCCGgacCUGC-CGCCg -3'
miRNA:   3'- -GCcCGCGG-GGCgGGGGU---GGCGuGCGG- -5'
31245 5' -68.5 NC_006560.1 + 16515 0.66 0.405845
Target:  5'- aGcGGCaGCCgCagcaGCUCCgcggcgcuggggCGCCGCGCGCCa -3'
miRNA:   3'- gC-CCG-CGG-Gg---CGGGG------------GUGGCGUGCGG- -5'
31245 5' -68.5 NC_006560.1 + 135085 0.66 0.405845
Target:  5'- gGGGCGCCgCCGUa-CCGgCGCaccagGCGCUc -3'
miRNA:   3'- gCCCGCGG-GGCGggGGUgGCG-----UGCGG- -5'
31245 5' -68.5 NC_006560.1 + 136110 0.66 0.405059
Target:  5'- gGGGCGCucCCCGCgUUCAcCCGCAgcaacauCGUCg -3'
miRNA:   3'- gCCCGCG--GGGCGgGGGU-GGCGU-------GCGG- -5'
31245 5' -68.5 NC_006560.1 + 29911 0.66 0.405059
Target:  5'- -uGGCuCCCCaugcgcaacagcuGCCCCC-UCGCaACGCCg -3'
miRNA:   3'- gcCCGcGGGG-------------CGGGGGuGGCG-UGCGG- -5'
31245 5' -68.5 NC_006560.1 + 133478 0.66 0.40114
Target:  5'- gGGGCGUCCgGCgUCUACgGgcgagcgcgagcggcCGCGCCg -3'
miRNA:   3'- gCCCGCGGGgCGgGGGUGgC---------------GUGCGG- -5'
31245 5' -68.5 NC_006560.1 + 119961 0.66 0.398023
Target:  5'- --cGCGCUCCGCgCCCUgACCuucaCGCGCCu -3'
miRNA:   3'- gccCGCGGGGCG-GGGG-UGGc---GUGCGG- -5'
31245 5' -68.5 NC_006560.1 + 50327 0.66 0.398023
Target:  5'- uGGcCGCCCUcgcggGCUCgCCACCGCGguuccUGCCa -3'
miRNA:   3'- gCCcGCGGGG-----CGGG-GGUGGCGU-----GCGG- -5'
31245 5' -68.5 NC_006560.1 + 12475 0.66 0.398023
Target:  5'- cCGGaGCGaggucccaCCCCgaaacgGCCCCCgcacgacgACCGCACGgCg -3'
miRNA:   3'- -GCC-CGC--------GGGG------CGGGGG--------UGGCGUGCgG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.