miRNA display CGI


Results 1 - 20 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31246 5' -60.6 NC_006560.1 + 131215 0.66 0.769393
Target:  5'- cUGCG-CCggcccgcgaCGCCGGGGcUGCGGCu -3'
miRNA:   3'- aGCGCaGGaca------GCGGCCUCaGCGCCG- -5'
31246 5' -60.6 NC_006560.1 + 78793 0.66 0.769393
Target:  5'- uUCGUGUCCcccgGcguggagguucUCGCCGGGcUCGCcGCg -3'
miRNA:   3'- -AGCGCAGGa---C-----------AGCGGCCUcAGCGcCG- -5'
31246 5' -60.6 NC_006560.1 + 18540 0.66 0.769393
Target:  5'- cCGCG-CCUGUaccaccUGUgGGuGGUCGgGGCg -3'
miRNA:   3'- aGCGCaGGACA------GCGgCC-UCAGCgCCG- -5'
31246 5' -60.6 NC_006560.1 + 36910 0.66 0.769393
Target:  5'- gCGCcgggCCgagCGCCGGAGcgucUgGCGGCg -3'
miRNA:   3'- aGCGca--GGacaGCGGCCUC----AgCGCCG- -5'
31246 5' -60.6 NC_006560.1 + 3486 0.66 0.769393
Target:  5'- -gGCGUCg-G-CGUCGGcGUCGgCGGCg -3'
miRNA:   3'- agCGCAGgaCaGCGGCCuCAGC-GCCG- -5'
31246 5' -60.6 NC_006560.1 + 138094 0.66 0.769393
Target:  5'- aUCGCGUacagCCUccacggCGCCGcGAcGUCGuCGGCc -3'
miRNA:   3'- -AGCGCA----GGAca----GCGGC-CU-CAGC-GCCG- -5'
31246 5' -60.6 NC_006560.1 + 130509 0.66 0.769393
Target:  5'- cCGCGcCCggcgGcCgGCCGGuGgcgccgCGCGGCg -3'
miRNA:   3'- aGCGCaGGa---CaG-CGGCCuCa-----GCGCCG- -5'
31246 5' -60.6 NC_006560.1 + 101342 0.66 0.769393
Target:  5'- gCGCGUCC---CGCCuGGGcGUCGaGGCa -3'
miRNA:   3'- aGCGCAGGacaGCGG-CCU-CAGCgCCG- -5'
31246 5' -60.6 NC_006560.1 + 4989 0.66 0.769393
Target:  5'- cCGgGUCCga--GCCGGGGgCGgGGUg -3'
miRNA:   3'- aGCgCAGGacagCGGCCUCaGCgCCG- -5'
31246 5' -60.6 NC_006560.1 + 121854 0.66 0.761238
Target:  5'- cCGCGUCCaccccuccccccgCGCCGaGGUCGauCGGCg -3'
miRNA:   3'- aGCGCAGGaca----------GCGGCcUCAGC--GCCG- -5'
31246 5' -60.6 NC_006560.1 + 3651 0.66 0.760327
Target:  5'- -gGCGgCCUcggcGcCGCCGGGGaCGCGGa -3'
miRNA:   3'- agCGCaGGA----CaGCGGCCUCaGCGCCg -5'
31246 5' -60.6 NC_006560.1 + 120390 0.66 0.760327
Target:  5'- gCGCGUCCUG--GCCaucGAGggCGaCGGCa -3'
miRNA:   3'- aGCGCAGGACagCGGc--CUCa-GC-GCCG- -5'
31246 5' -60.6 NC_006560.1 + 118823 0.66 0.760327
Target:  5'- gCcCGUCCUGgCGCCGuucGAcGcCGCGGCc -3'
miRNA:   3'- aGcGCAGGACaGCGGC---CU-CaGCGCCG- -5'
31246 5' -60.6 NC_006560.1 + 15012 0.66 0.760327
Target:  5'- gUCGCaUCC--UCGCCcgcGGGGU-GCGGCg -3'
miRNA:   3'- -AGCGcAGGacAGCGG---CCUCAgCGCCG- -5'
31246 5' -60.6 NC_006560.1 + 82989 0.66 0.760327
Target:  5'- aCGCGuUCCUGUgCGCCa-AGUgccugGCGGCg -3'
miRNA:   3'- aGCGC-AGGACA-GCGGccUCAg----CGCCG- -5'
31246 5' -60.6 NC_006560.1 + 122688 0.66 0.760327
Target:  5'- cCGCGuacaUCCUGucccUCGUgGGGGUCcacCGGCu -3'
miRNA:   3'- aGCGC----AGGAC----AGCGgCCUCAGc--GCCG- -5'
31246 5' -60.6 NC_006560.1 + 119427 0.66 0.760327
Target:  5'- uUCGCGUUCgc-CGCCaacGUUGCGGCc -3'
miRNA:   3'- -AGCGCAGGacaGCGGccuCAGCGCCG- -5'
31246 5' -60.6 NC_006560.1 + 75429 0.66 0.760327
Target:  5'- cCGCGacagCCgcgagCGCUGG-GUCGCGGa -3'
miRNA:   3'- aGCGCa---GGaca--GCGGCCuCAGCGCCg -5'
31246 5' -60.6 NC_006560.1 + 2014 0.66 0.759415
Target:  5'- -gGCGUCCUcggCGUCGGcgagcagcgugucGG-CGCGGCc -3'
miRNA:   3'- agCGCAGGAca-GCGGCC-------------UCaGCGCCG- -5'
31246 5' -60.6 NC_006560.1 + 65425 0.66 0.759415
Target:  5'- aCGCGggagcggaCCgggCGCCGGAggucaccGUCGCGGg -3'
miRNA:   3'- aGCGCa-------GGacaGCGGCCU-------CAGCGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.