miRNA display CGI


Results 21 - 40 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31247 3' -54.8 NC_006560.1 + 94779 0.66 0.950351
Target:  5'- uGAGcGcGCGuUCGGCGAgcgccUGGCGGCg -3'
miRNA:   3'- gCUCuC-CGCuAGCCGCUau---GCUGCUG- -5'
31247 3' -54.8 NC_006560.1 + 8551 0.66 0.950351
Target:  5'- gGuGGGGCGAcugUGGC--UGCGGCGAUc -3'
miRNA:   3'- gCuCUCCGCUa--GCCGcuAUGCUGCUG- -5'
31247 3' -54.8 NC_006560.1 + 2625 0.66 0.950351
Target:  5'- aGGGcAGGUaGAcgUGGCGGcgcGCGACGACg -3'
miRNA:   3'- gCUC-UCCG-CUa-GCCGCUa--UGCUGCUG- -5'
31247 3' -54.8 NC_006560.1 + 103775 0.66 0.949937
Target:  5'- cCGAGAcgGGCGcccGUCGcgaugcuGCGAaucUACGugGACg -3'
miRNA:   3'- -GCUCU--CCGC---UAGC-------CGCU---AUGCugCUG- -5'
31247 3' -54.8 NC_006560.1 + 42053 0.66 0.946106
Target:  5'- gGAGGGGCGGaggCGGCcuccgcggGCGGgGGCu -3'
miRNA:   3'- gCUCUCCGCUa--GCCGcua-----UGCUgCUG- -5'
31247 3' -54.8 NC_006560.1 + 14205 0.66 0.946106
Target:  5'- gCGuGGGGUGGUCgGGCGggGCGcccGCGGu -3'
miRNA:   3'- -GCuCUCCGCUAG-CCGCuaUGC---UGCUg -5'
31247 3' -54.8 NC_006560.1 + 50396 0.66 0.946106
Target:  5'- aCGAG-GGCGAcuacccgGGCGcgGCGGgGGCg -3'
miRNA:   3'- -GCUCuCCGCUag-----CCGCuaUGCUgCUG- -5'
31247 3' -54.8 NC_006560.1 + 39624 0.66 0.946106
Target:  5'- gCGGcGGGCG-UCGGCGuccggGCG-CGGCg -3'
miRNA:   3'- -GCUcUCCGCuAGCCGCua---UGCuGCUG- -5'
31247 3' -54.8 NC_006560.1 + 39454 0.66 0.946106
Target:  5'- aCGGcgcuGcGCGGUCGGCGccgccggcGCGGCGACg -3'
miRNA:   3'- -GCUcu--C-CGCUAGCCGCua------UGCUGCUG- -5'
31247 3' -54.8 NC_006560.1 + 11205 0.66 0.945668
Target:  5'- cCGAGAucGCGGUCaGCGAcggcaccgcggucUGCGACGGg -3'
miRNA:   3'- -GCUCUc-CGCUAGcCGCU-------------AUGCUGCUg -5'
31247 3' -54.8 NC_006560.1 + 132958 0.66 0.941628
Target:  5'- --cGAGGCGGUCGcGUGGgccCGGgGGCa -3'
miRNA:   3'- gcuCUCCGCUAGC-CGCUau-GCUgCUG- -5'
31247 3' -54.8 NC_006560.1 + 146819 0.66 0.941628
Target:  5'- --cGGGGCGGggucugggugUgGGCGugcUGCGGCGGCg -3'
miRNA:   3'- gcuCUCCGCU----------AgCCGCu--AUGCUGCUG- -5'
31247 3' -54.8 NC_006560.1 + 143389 0.66 0.941628
Target:  5'- cCGGGGGGCGG-CGGCccu-CGGCG-Ca -3'
miRNA:   3'- -GCUCUCCGCUaGCCGcuauGCUGCuG- -5'
31247 3' -54.8 NC_006560.1 + 100088 0.66 0.941628
Target:  5'- gGAGguAGGUGugccCGGCGAUGCcggccugccGGCGGCg -3'
miRNA:   3'- gCUC--UCCGCua--GCCGCUAUG---------CUGCUG- -5'
31247 3' -54.8 NC_006560.1 + 17492 0.66 0.941628
Target:  5'- gGGGGGGUGGggcuggagCGcGCGGggcCGGCGGCg -3'
miRNA:   3'- gCUCUCCGCUa-------GC-CGCUau-GCUGCUG- -5'
31247 3' -54.8 NC_006560.1 + 85909 0.66 0.941628
Target:  5'- ----cGGCGGUCGcGCGGccagcGCGGCGGCc -3'
miRNA:   3'- gcucuCCGCUAGC-CGCUa----UGCUGCUG- -5'
31247 3' -54.8 NC_006560.1 + 147630 0.66 0.938829
Target:  5'- gGGGAGGCGGugcguccagaugaagUccaCGGCGGUGcCGGCGcGCa -3'
miRNA:   3'- gCUCUCCGCU---------------A---GCCGCUAU-GCUGC-UG- -5'
31247 3' -54.8 NC_006560.1 + 51975 0.66 0.936916
Target:  5'- cCGGGcGGCGggCGGCGGgccUGcCGGCg -3'
miRNA:   3'- -GCUCuCCGCuaGCCGCUau-GCuGCUG- -5'
31247 3' -54.8 NC_006560.1 + 106434 0.66 0.936916
Target:  5'- cCGcGGAGGCGGUCgcgGGCGAc-CGcCGGCu -3'
miRNA:   3'- -GC-UCUCCGCUAG---CCGCUauGCuGCUG- -5'
31247 3' -54.8 NC_006560.1 + 3167 0.66 0.936916
Target:  5'- aGAGcGGGUGGuccgagagcUCGGCGAcgACGcGCGGCu -3'
miRNA:   3'- gCUC-UCCGCU---------AGCCGCUa-UGC-UGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.