miRNA display CGI


Results 21 - 40 of 769 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31247 5' -65.6 NC_006560.1 + 65893 0.66 0.555901
Target:  5'- uCCGcgaagGCCGCGuaGGCGcacGUGCgGGCCg -3'
miRNA:   3'- -GGCag---CGGCGCggCCGC---CGCGgCUGG- -5'
31247 5' -65.6 NC_006560.1 + 47991 0.66 0.555901
Target:  5'- cCCGucUCGCCGCcCCcGCc-CGCCGGCCc -3'
miRNA:   3'- -GGC--AGCGGCGcGGcCGccGCGGCUGG- -5'
31247 5' -65.6 NC_006560.1 + 16158 0.66 0.555901
Target:  5'- cCCG-CGCCaCGCUc-CGGUGCCgGACCa -3'
miRNA:   3'- -GGCaGCGGcGCGGccGCCGCGG-CUGG- -5'
31247 5' -65.6 NC_006560.1 + 131312 0.66 0.555901
Target:  5'- cCCGgcugGCCGCgGCCcuguGCGGCcUCGGCCu -3'
miRNA:   3'- -GGCag--CGGCG-CGGc---CGCCGcGGCUGG- -5'
31247 5' -65.6 NC_006560.1 + 52821 0.66 0.555901
Target:  5'- cCUGcCGCCccaGCGCCGacaCGGCGCugCGGCUc -3'
miRNA:   3'- -GGCaGCGG---CGCGGCc--GCCGCG--GCUGG- -5'
31247 5' -65.6 NC_006560.1 + 127487 0.66 0.555901
Target:  5'- aCGggcUCGCCGC-CCGcgggcGCGGCGgaGGCCc -3'
miRNA:   3'- gGC---AGCGGCGcGGC-----CGCCGCggCUGG- -5'
31247 5' -65.6 NC_006560.1 + 9624 0.66 0.555901
Target:  5'- cCUGggGCCGCGCCGaaGGgGUgggugCGGCCg -3'
miRNA:   3'- -GGCagCGGCGCGGCcgCCgCG-----GCUGG- -5'
31247 5' -65.6 NC_006560.1 + 123199 0.66 0.555901
Target:  5'- gCCGucUCGCUGCgGCgGGCcguccuCGCCGACUu -3'
miRNA:   3'- -GGC--AGCGGCG-CGgCCGcc----GCGGCUGG- -5'
31247 5' -65.6 NC_006560.1 + 25161 0.66 0.555901
Target:  5'- cCCGUCuaccuggcgcugGaCCGCGCgGccGCGcGCGCCgGGCCc -3'
miRNA:   3'- -GGCAG------------C-GGCGCGgC--CGC-CGCGG-CUGG- -5'
31247 5' -65.6 NC_006560.1 + 2594 0.66 0.555901
Target:  5'- aCGUCGCacuGCG-CGGCGGgcaGCaCGGCg -3'
miRNA:   3'- gGCAGCGg--CGCgGCCGCCg--CG-GCUGg -5'
31247 5' -65.6 NC_006560.1 + 112981 0.66 0.555901
Target:  5'- aCCGggacUGCCGggugaaCGCgGGCGG-GCaCGACCc -3'
miRNA:   3'- -GGCa---GCGGC------GCGgCCGCCgCG-GCUGG- -5'
31247 5' -65.6 NC_006560.1 + 58736 0.66 0.555901
Target:  5'- gCCGcCGCCGgaCGCCGaGaaGCGCCcguugGGCCc -3'
miRNA:   3'- -GGCaGCGGC--GCGGC-CgcCGCGG-----CUGG- -5'
31247 5' -65.6 NC_006560.1 + 48113 0.66 0.555901
Target:  5'- cCCGaCGCCGCGaCGGCcccgaGGCcguacGCCacGACCc -3'
miRNA:   3'- -GGCaGCGGCGCgGCCG-----CCG-----CGG--CUGG- -5'
31247 5' -65.6 NC_006560.1 + 1229 0.66 0.554979
Target:  5'- gCCccUGCCGCGCCcccacgcagccccGGCGGgGCCc-CCg -3'
miRNA:   3'- -GGcaGCGGCGCGG-------------CCGCCgCGGcuGG- -5'
31247 5' -65.6 NC_006560.1 + 35513 0.66 0.553137
Target:  5'- cCCGgagGCCGCGCCucccauuagGGCccgcgcggggcgggGGgGCCGGCa -3'
miRNA:   3'- -GGCag-CGGCGCGG---------CCG--------------CCgCGGCUGg -5'
31247 5' -65.6 NC_006560.1 + 140658 0.66 0.552217
Target:  5'- gUCGcUCGCCGCGCCGcugcgacucgcaaCGGCGaguCGcACCu -3'
miRNA:   3'- -GGC-AGCGGCGCGGCc------------GCCGCg--GC-UGG- -5'
31247 5' -65.6 NC_006560.1 + 83915 0.66 0.546704
Target:  5'- aCUG-CaUCGCGCCGGUGGU--CGACCg -3'
miRNA:   3'- -GGCaGcGGCGCGGCCGCCGcgGCUGG- -5'
31247 5' -65.6 NC_006560.1 + 101401 0.66 0.546704
Target:  5'- cUCGacCGUCGCGUCGGCccGGUagaGCgGGCCg -3'
miRNA:   3'- -GGCa-GCGGCGCGGCCG--CCG---CGgCUGG- -5'
31247 5' -65.6 NC_006560.1 + 60073 0.66 0.546704
Target:  5'- aCCGaggcCGCCGUGUU--CGGCGCCaaGGCCa -3'
miRNA:   3'- -GGCa---GCGGCGCGGccGCCGCGG--CUGG- -5'
31247 5' -65.6 NC_006560.1 + 71308 0.66 0.546704
Target:  5'- uCCGUgGuCCGCGUCGuGUcGCGCCcGCUc -3'
miRNA:   3'- -GGCAgC-GGCGCGGC-CGcCGCGGcUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.