miRNA display CGI


Results 1 - 20 of 426 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31248 3' -54.1 NC_006560.1 + 51615 0.65 0.969409
Target:  5'- gCCUUCgACGGcgggcgcggcgaGCCCGCcguGGGCGCCu -3'
miRNA:   3'- gGGAGGgUGCUa-----------CGGGUGu--UUUGCGG- -5'
31248 3' -54.1 NC_006560.1 + 74243 0.66 0.966963
Target:  5'- gCCCU-CgACGcgGCCCu----GCGCCg -3'
miRNA:   3'- -GGGAgGgUGCuaCGGGuguuuUGCGG- -5'
31248 3' -54.1 NC_006560.1 + 124019 0.66 0.966963
Target:  5'- cCCCggCCCgACGGccUGCCC-Cu---CGCCg -3'
miRNA:   3'- -GGGa-GGG-UGCU--ACGGGuGuuuuGCGG- -5'
31248 3' -54.1 NC_006560.1 + 79643 0.66 0.966963
Target:  5'- cCCCUCgCCAcccgcaacgucCGgcGCCCcccGCucGGCGCCc -3'
miRNA:   3'- -GGGAG-GGU-----------GCuaCGGG---UGuuUUGCGG- -5'
31248 3' -54.1 NC_006560.1 + 43344 0.66 0.966963
Target:  5'- cCCCgcggCCGCGG-GCCCGC-GGGCGUa -3'
miRNA:   3'- -GGGag--GGUGCUaCGGGUGuUUUGCGg -5'
31248 3' -54.1 NC_006560.1 + 72610 0.66 0.966963
Target:  5'- aCUCggaCCCGCcggGCCgCGCGGcACGCCg -3'
miRNA:   3'- -GGGa--GGGUGcuaCGG-GUGUUuUGCGG- -5'
31248 3' -54.1 NC_006560.1 + 23876 0.66 0.966963
Target:  5'- cCCCUgCUggACGccGCCgACGccGACGCCg -3'
miRNA:   3'- -GGGAgGG--UGCuaCGGgUGUu-UUGCGG- -5'
31248 3' -54.1 NC_006560.1 + 11917 0.66 0.966963
Target:  5'- gUCCgcgaagCCGCGG-GCCCGCAGGAgggGCCg -3'
miRNA:   3'- -GGGag----GGUGCUaCGGGUGUUUUg--CGG- -5'
31248 3' -54.1 NC_006560.1 + 1230 0.66 0.966963
Target:  5'- cCCCUgCCGCGcc-CCCACGcAGCcCCg -3'
miRNA:   3'- -GGGAgGGUGCuacGGGUGUuUUGcGG- -5'
31248 3' -54.1 NC_006560.1 + 29591 0.66 0.966963
Target:  5'- cUCCUCCC-CGAcagGCggCGgGGGACGCCc -3'
miRNA:   3'- -GGGAGGGuGCUa--CGg-GUgUUUUGCGG- -5'
31248 3' -54.1 NC_006560.1 + 42571 0.66 0.966963
Target:  5'- gCCCg-CCGCGgcGgCCACGuc-CGCCg -3'
miRNA:   3'- -GGGagGGUGCuaCgGGUGUuuuGCGG- -5'
31248 3' -54.1 NC_006560.1 + 117835 0.66 0.966647
Target:  5'- gCCCUgCgcgugagCugGggGCCCACGGccagcuGCGCCc -3'
miRNA:   3'- -GGGAgG-------GugCuaCGGGUGUUu-----UGCGG- -5'
31248 3' -54.1 NC_006560.1 + 76721 0.66 0.966647
Target:  5'- gCCggcggCCCugGAggcgGCgCGCGAGcagcuguGCGCCc -3'
miRNA:   3'- gGGa----GGGugCUa---CGgGUGUUU-------UGCGG- -5'
31248 3' -54.1 NC_006560.1 + 50714 0.66 0.966011
Target:  5'- aCCUCaccggacacgcgcuCCGCGA-GCUCACcGAcCGCCa -3'
miRNA:   3'- gGGAG--------------GGUGCUaCGGGUGuUUuGCGG- -5'
31248 3' -54.1 NC_006560.1 + 39519 0.66 0.96504
Target:  5'- gCCUCUCGCGucgccGCCguCGggccccucgaccuccGAGCGCCg -3'
miRNA:   3'- gGGAGGGUGCua---CGGguGU---------------UUUGCGG- -5'
31248 3' -54.1 NC_006560.1 + 77099 0.66 0.963715
Target:  5'- gCCgCCCGC---GCCCACAgGGGCGCg -3'
miRNA:   3'- gGGaGGGUGcuaCGGGUGU-UUUGCGg -5'
31248 3' -54.1 NC_006560.1 + 139086 0.66 0.963715
Target:  5'- gCCCUgCCgGCcGUGCCCgagaACGAcGACGUCu -3'
miRNA:   3'- -GGGA-GGgUGcUACGGG----UGUU-UUGCGG- -5'
31248 3' -54.1 NC_006560.1 + 6121 0.66 0.963715
Target:  5'- gCCCUCaCCGC---GCCUGCGcgGCGUCc -3'
miRNA:   3'- -GGGAG-GGUGcuaCGGGUGUuuUGCGG- -5'
31248 3' -54.1 NC_006560.1 + 16011 0.66 0.963715
Target:  5'- cCCCguaCCAcCGGaGCgCgACGGGGCGCCg -3'
miRNA:   3'- -GGGag-GGU-GCUaCG-GgUGUUUUGCGG- -5'
31248 3' -54.1 NC_006560.1 + 145889 0.66 0.963715
Target:  5'- aCC-CCCGCGuc-CCUACGGGuCGCCc -3'
miRNA:   3'- gGGaGGGUGCuacGGGUGUUUuGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.