miRNA display CGI


Results 1 - 20 of 436 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31248 5' -63 NC_006560.1 + 74548 0.66 0.625556
Target:  5'- gGGGgUCCUGCG---GCCGCuCCCGGAc -3'
miRNA:   3'- gCCCgGGGGUGUuugCGGCG-GGGUCU- -5'
31248 5' -63 NC_006560.1 + 143185 0.66 0.625556
Target:  5'- --uGCCCCCGC--GCGCCccgugccgGCCuCCGGAg -3'
miRNA:   3'- gccCGGGGGUGuuUGCGG--------CGG-GGUCU- -5'
31248 5' -63 NC_006560.1 + 27141 0.66 0.625556
Target:  5'- gGGGCCCgCACcga-GCCGCgggCCGGGc -3'
miRNA:   3'- gCCCGGGgGUGuuugCGGCGg--GGUCU- -5'
31248 5' -63 NC_006560.1 + 7914 0.66 0.625556
Target:  5'- -uGGCCCUgGCGGACGgCGgCCguGAa -3'
miRNA:   3'- gcCCGGGGgUGUUUGCgGCgGGguCU- -5'
31248 5' -63 NC_006560.1 + 105741 0.66 0.625556
Target:  5'- gCGGGCCuCCUGCGGAC-CC-CCUCGGc -3'
miRNA:   3'- -GCCCGG-GGGUGUUUGcGGcGGGGUCu -5'
31248 5' -63 NC_006560.1 + 16416 0.66 0.625556
Target:  5'- gCGGuGCCgCCCGCccGCGCCgGCUCCc-- -3'
miRNA:   3'- -GCC-CGG-GGGUGuuUGCGG-CGGGGucu -5'
31248 5' -63 NC_006560.1 + 75301 0.66 0.625556
Target:  5'- gGGGaCCCCUcccCGAGCgGCCGCgCCCugcaGGAg -3'
miRNA:   3'- gCCC-GGGGGu--GUUUG-CGGCG-GGG----UCU- -5'
31248 5' -63 NC_006560.1 + 55219 0.66 0.625556
Target:  5'- gCGcGGCgCgCGCAGACGCCGaCgCCCAc- -3'
miRNA:   3'- -GC-CCGgGgGUGUUUGCGGC-G-GGGUcu -5'
31248 5' -63 NC_006560.1 + 122659 0.66 0.625556
Target:  5'- gGGGCCgCUgAC---CGCCGCCCCc-- -3'
miRNA:   3'- gCCCGG-GGgUGuuuGCGGCGGGGucu -5'
31248 5' -63 NC_006560.1 + 17902 0.66 0.625556
Target:  5'- gCGGaGCgCUCCGCGcGCGCCGgcaCCCgAGGg -3'
miRNA:   3'- -GCC-CG-GGGGUGUuUGCGGC---GGGgUCU- -5'
31248 5' -63 NC_006560.1 + 50014 0.66 0.625556
Target:  5'- aCGGGCCCgCgGCc--C-CCGCCCgCGGAg -3'
miRNA:   3'- -GCCCGGG-GgUGuuuGcGGCGGG-GUCU- -5'
31248 5' -63 NC_006560.1 + 46635 0.66 0.62458
Target:  5'- gGGGCgugucuuugcUCCCGCGAGCcaccuguggauugGCuCGCCCCgAGAa -3'
miRNA:   3'- gCCCG----------GGGGUGUUUG-------------CG-GCGGGG-UCU- -5'
31248 5' -63 NC_006560.1 + 70890 0.66 0.615796
Target:  5'- aGGGCcgcuccguCCUCACGAGcCGCCGCgaCCUGGGc -3'
miRNA:   3'- gCCCG--------GGGGUGUUU-GCGGCG--GGGUCU- -5'
31248 5' -63 NC_006560.1 + 105078 0.66 0.615796
Target:  5'- gCGGGUcucgccguCCUCGCGGG-GCCGgCCCGGGa -3'
miRNA:   3'- -GCCCG--------GGGGUGUUUgCGGCgGGGUCU- -5'
31248 5' -63 NC_006560.1 + 6473 0.66 0.615796
Target:  5'- cCGcGCCCaCCGCccggGAACGCCGCgCCGa- -3'
miRNA:   3'- -GCcCGGG-GGUG----UUUGCGGCGgGGUcu -5'
31248 5' -63 NC_006560.1 + 19558 0.66 0.615796
Target:  5'- gGcGGCCCCC-CGGAgGCgGCaCCGGGc -3'
miRNA:   3'- gC-CCGGGGGuGUUUgCGgCGgGGUCU- -5'
31248 5' -63 NC_006560.1 + 81412 0.66 0.615796
Target:  5'- aGGGCgcgcgccaccaCCCGCGGGCcgggGCgGCCCCGGu -3'
miRNA:   3'- gCCCGg----------GGGUGUUUG----CGgCGGGGUCu -5'
31248 5' -63 NC_006560.1 + 51780 0.66 0.615796
Target:  5'- uCGcGCCCCCcggcgGCGGGCGCCgggaccgugGCCCCGc- -3'
miRNA:   3'- -GCcCGGGGG-----UGUUUGCGG---------CGGGGUcu -5'
31248 5' -63 NC_006560.1 + 122484 0.66 0.615796
Target:  5'- gGGGCaCCCGCuccccccaGCCgggaucGCCCCGGAc -3'
miRNA:   3'- gCCCGgGGGUGuuug----CGG------CGGGGUCU- -5'
31248 5' -63 NC_006560.1 + 87352 0.66 0.615796
Target:  5'- -uGGCCgauguCCCACAcGCGaaagaCGCCCCGGc -3'
miRNA:   3'- gcCCGG-----GGGUGUuUGCg----GCGGGGUCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.