miRNA display CGI


Results 21 - 40 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31249 5' -57.7 NC_006560.1 + 43418 0.66 0.838843
Target:  5'- -cCGCGGcgCCGGG-GGCgucggCGCGcGGCa -3'
miRNA:   3'- cuGCGUCuaGGCUCgCCGa----GUGU-CCG- -5'
31249 5' -57.7 NC_006560.1 + 21295 0.66 0.838843
Target:  5'- cGACGCgAGggCgCGAGCGGg-CGC-GGCg -3'
miRNA:   3'- -CUGCG-UCuaG-GCUCGCCgaGUGuCCG- -5'
31249 5' -57.7 NC_006560.1 + 11995 0.66 0.838843
Target:  5'- -cUGCGGGU-CGAGCGGCaca-GGGCg -3'
miRNA:   3'- cuGCGUCUAgGCUCGCCGagugUCCG- -5'
31249 5' -57.7 NC_006560.1 + 16627 0.66 0.838843
Target:  5'- cGGgGCGGGUguacgCCGGGCGGCgguugCGCGccgcccgguGGCg -3'
miRNA:   3'- -CUgCGUCUA-----GGCUCGCCGa----GUGU---------CCG- -5'
31249 5' -57.7 NC_006560.1 + 94972 0.66 0.83803
Target:  5'- uGGCGCGcAUCgGGggcgggcGCGGCgaCGCGGGCg -3'
miRNA:   3'- -CUGCGUcUAGgCU-------CGCCGa-GUGUCCG- -5'
31249 5' -57.7 NC_006560.1 + 35266 0.66 0.835582
Target:  5'- cGCGCGGccgccgcgCCGGGCGGCggggcccggggucCGgGGGCg -3'
miRNA:   3'- cUGCGUCua------GGCUCGCCGa------------GUgUCCG- -5'
31249 5' -57.7 NC_006560.1 + 6621 0.66 0.830636
Target:  5'- -uCGgGGGaCCGGG-GGCUCGgGGGCu -3'
miRNA:   3'- cuGCgUCUaGGCUCgCCGAGUgUCCG- -5'
31249 5' -57.7 NC_006560.1 + 116437 0.66 0.830636
Target:  5'- cGCGCcc--CCGGGgGGCUCGCAguGGUa -3'
miRNA:   3'- cUGCGucuaGGCUCgCCGAGUGU--CCG- -5'
31249 5' -57.7 NC_006560.1 + 75501 0.66 0.830636
Target:  5'- cGACGCGG--UCGAGCuGCgccgCcuGCAGGCg -3'
miRNA:   3'- -CUGCGUCuaGGCUCGcCGa---G--UGUCCG- -5'
31249 5' -57.7 NC_006560.1 + 146988 0.66 0.830636
Target:  5'- --gGCGGggCauGGCGGCUCGC-GGCc -3'
miRNA:   3'- cugCGUCuaGgcUCGCCGAGUGuCCG- -5'
31249 5' -57.7 NC_006560.1 + 41005 0.66 0.830636
Target:  5'- cACGCGGGcgCCGAGuCGuuGCUCGCgccgacGGGCc -3'
miRNA:   3'- cUGCGUCUa-GGCUC-GC--CGAGUG------UCCG- -5'
31249 5' -57.7 NC_006560.1 + 40863 0.66 0.830636
Target:  5'- cGACcCGGAgccccgagCCGGGCGGCggcgaCAC-GGCg -3'
miRNA:   3'- -CUGcGUCUa-------GGCUCGCCGa----GUGuCCG- -5'
31249 5' -57.7 NC_006560.1 + 87695 0.66 0.830636
Target:  5'- uGAC-CAGGUCCuccgcguuGGCGGC-CACGGGg -3'
miRNA:   3'- -CUGcGUCUAGGc-------UCGCCGaGUGUCCg -5'
31249 5' -57.7 NC_006560.1 + 11114 0.66 0.830636
Target:  5'- gGGCGgGGGg--GGGgGGCUCAgCGGGCg -3'
miRNA:   3'- -CUGCgUCUaggCUCgCCGAGU-GUCCG- -5'
31249 5' -57.7 NC_006560.1 + 26393 0.66 0.828138
Target:  5'- gGGCGCAGGggcgcgcccCCGGGCGuGCaggccuagugaagaUCGgGGGCg -3'
miRNA:   3'- -CUGCGUCUa--------GGCUCGC-CG--------------AGUgUCCG- -5'
31249 5' -57.7 NC_006560.1 + 118356 0.66 0.822251
Target:  5'- cGACGC----CgGGGCGGUgcUCGCGGGCc -3'
miRNA:   3'- -CUGCGucuaGgCUCGCCG--AGUGUCCG- -5'
31249 5' -57.7 NC_006560.1 + 121937 0.66 0.822251
Target:  5'- -cCGCGGGcCCGGGCGcGCggcucugCGCcGGCg -3'
miRNA:   3'- cuGCGUCUaGGCUCGC-CGa------GUGuCCG- -5'
31249 5' -57.7 NC_006560.1 + 130536 0.66 0.822251
Target:  5'- cGCGCGGcgCCGcGCugGGCguggacgCGCAGGUc -3'
miRNA:   3'- cUGCGUCuaGGCuCG--CCGa------GUGUCCG- -5'
31249 5' -57.7 NC_006560.1 + 19569 0.66 0.822251
Target:  5'- gGAgGCGGcaCCGGGCGGCgcCGC-GGCc -3'
miRNA:   3'- -CUgCGUCuaGGCUCGCCGa-GUGuCCG- -5'
31249 5' -57.7 NC_006560.1 + 76835 0.66 0.822251
Target:  5'- gGGCGCccucgggccaAGAgcgCCGAGCGGg-CGgGGGCc -3'
miRNA:   3'- -CUGCG----------UCUa--GGCUCGCCgaGUgUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.