Results 1 - 20 of 24 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3125 | 3' | -57.4 | NC_001493.1 | + | 108919 | 0.66 | 0.826597 |
Target: 5'- cGCCcGCugUCCGCGUCGuGAGcaacGCGGUg -3' miRNA: 3'- -UGGuCG--AGGCGUAGCuCUCac--CGUCG- -5' |
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3125 | 3' | -57.4 | NC_001493.1 | + | 36165 | 0.66 | 0.825746 |
Target: 5'- --gGGCUCCuguggagcgaggGguUCGGGAacgggcuGUGGCAGCg -3' miRNA: 3'- uggUCGAGG------------CguAGCUCU-------CACCGUCG- -5' |
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3125 | 3' | -57.4 | NC_001493.1 | + | 13493 | 0.67 | 0.772673 |
Target: 5'- gAUCGcCUCUGCAUCGGGGGggGGaggaGGCu -3' miRNA: 3'- -UGGUcGAGGCGUAGCUCUCa-CCg---UCG- -5' |
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3125 | 3' | -57.4 | NC_001493.1 | + | 57784 | 0.67 | 0.772673 |
Target: 5'- cCCGGUUCaGUAUCGAGGG-GGCGu- -3' miRNA: 3'- uGGUCGAGgCGUAGCUCUCaCCGUcg -5' |
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3125 | 3' | -57.4 | NC_001493.1 | + | 129047 | 0.67 | 0.772673 |
Target: 5'- gAUCGcCUCUGCAUCGGGGGggGGaggaGGCu -3' miRNA: 3'- -UGGUcGAGGCGUAGCUCUCa-CCg---UCG- -5' |
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3125 | 3' | -57.4 | NC_001493.1 | + | 87669 | 0.67 | 0.763189 |
Target: 5'- aGCCGGCUCCucguacGCcgCGGG-G-GGCAGg -3' miRNA: 3'- -UGGUCGAGG------CGuaGCUCuCaCCGUCg -5' |
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3125 | 3' | -57.4 | NC_001493.1 | + | 30969 | 0.67 | 0.743878 |
Target: 5'- cACCGGC-CCGUcgacaaacuucGUCG-GGGUGGC-GCu -3' miRNA: 3'- -UGGUCGaGGCG-----------UAGCuCUCACCGuCG- -5' |
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3125 | 3' | -57.4 | NC_001493.1 | + | 29703 | 0.67 | 0.734069 |
Target: 5'- --gAGCUCCGCAacgCGAcucucGAGcUGGCGGUu -3' miRNA: 3'- uggUCGAGGCGUa--GCU-----CUC-ACCGUCG- -5' |
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3125 | 3' | -57.4 | NC_001493.1 | + | 19513 | 0.68 | 0.724171 |
Target: 5'- uAUCAGCUCC-CAcUUGaAGAGgcgcggGGCGGCg -3' miRNA: 3'- -UGGUCGAGGcGU-AGC-UCUCa-----CCGUCG- -5' |
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3125 | 3' | -57.4 | NC_001493.1 | + | 123818 | 0.69 | 0.663424 |
Target: 5'- cCCGcGCUCCaGCAcCGAuGGGUGGgAGCc -3' miRNA: 3'- uGGU-CGAGG-CGUaGCU-CUCACCgUCG- -5' |
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3125 | 3' | -57.4 | NC_001493.1 | + | 8264 | 0.69 | 0.663424 |
Target: 5'- cCCGcGCUCCaGCAcCGAuGGGUGGgAGCc -3' miRNA: 3'- uGGU-CGAGG-CGUaGCU-CUCACCgUCG- -5' |
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3125 | 3' | -57.4 | NC_001493.1 | + | 66023 | 0.69 | 0.631556 |
Target: 5'- uGCaCGGCgaccgCCGCGUCGAuaaacuccggaggGAGUgggacaccGGCAGCa -3' miRNA: 3'- -UG-GUCGa----GGCGUAGCU-------------CUCA--------CCGUCG- -5' |
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3125 | 3' | -57.4 | NC_001493.1 | + | 2885 | 0.7 | 0.612009 |
Target: 5'- gGCCAGagugggcagaguCUUCGagaaGAGGGUGGCGGCg -3' miRNA: 3'- -UGGUC------------GAGGCguagCUCUCACCGUCG- -5' |
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3125 | 3' | -57.4 | NC_001493.1 | + | 118439 | 0.7 | 0.612009 |
Target: 5'- gGCCAGagugggcagaguCUUCGagaaGAGGGUGGCGGCg -3' miRNA: 3'- -UGGUC------------GAGGCguagCUCUCACCGUCG- -5' |
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3125 | 3' | -57.4 | NC_001493.1 | + | 55086 | 0.7 | 0.60174 |
Target: 5'- aGCgAGCUCCGggcuggucggcuCAUcCGAGAacugugaugGUGGCGGCg -3' miRNA: 3'- -UGgUCGAGGC------------GUA-GCUCU---------CACCGUCG- -5' |
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3125 | 3' | -57.4 | NC_001493.1 | + | 90079 | 0.71 | 0.550878 |
Target: 5'- uACgAGCUCCcCca-GAGGGUGGUAGCc -3' miRNA: 3'- -UGgUCGAGGcGuagCUCUCACCGUCG- -5' |
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3125 | 3' | -57.4 | NC_001493.1 | + | 60079 | 0.71 | 0.518025 |
Target: 5'- aACCGGUgaCCGUgacggguuggcgagGUCGAGGGUGGUGGUu -3' miRNA: 3'- -UGGUCGa-GGCG--------------UAGCUCUCACCGUCG- -5' |
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3125 | 3' | -57.4 | NC_001493.1 | + | 90992 | 0.74 | 0.367089 |
Target: 5'- cGCCGGCUCCGaGUCGAGAGgccGUucgAGCa -3' miRNA: 3'- -UGGUCGAGGCgUAGCUCUCac-CG---UCG- -5' |
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3125 | 3' | -57.4 | NC_001493.1 | + | 121348 | 1.04 | 0.00351 |
Target: 5'- cCCAGCUCCGCAUCGAGAGUGGUAGCu -3' miRNA: 3'- uGGUCGAGGCGUAGCUCUCACCGUCG- -5' |
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3125 | 3' | -57.4 | NC_001493.1 | + | 5794 | 1.04 | 0.00351 |
Target: 5'- cCCAGCUCCGCAUCGAGAGUGGUAGCu -3' miRNA: 3'- uGGUCGAGGCGUAGCUCUCACCGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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