miRNA display CGI


Results 1 - 20 of 347 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31250 3' -66.9 NC_006560.1 + 73498 0.66 0.375908
Target:  5'- -aGCGCUCgCGGGCCggCCCggaCACCCUCUUc -3'
miRNA:   3'- uaUGUGGG-GCCCGG--GGG---GUGGGGGAG- -5'
31250 3' -66.9 NC_006560.1 + 95753 0.66 0.375908
Target:  5'- --cCGCCCCGacuacGGUCgCCCgACCCCCg- -3'
miRNA:   3'- uauGUGGGGC-----CCGG-GGGgUGGGGGag -5'
31250 3' -66.9 NC_006560.1 + 21480 0.66 0.383662
Target:  5'- cUGCcCCCUGcccuuCCCCCUGCCCCCUg -3'
miRNA:   3'- uAUGuGGGGCcc---GGGGGGUGGGGGAg -5'
31250 3' -66.9 NC_006560.1 + 130331 0.66 0.375908
Target:  5'- -cGgGCCgCGGcGUCCCCCGCCgCCg- -3'
miRNA:   3'- uaUgUGGgGCC-CGGGGGGUGGgGGag -5'
31250 3' -66.9 NC_006560.1 + 1203 0.66 0.375908
Target:  5'- -cGgACCCCaGGCUCCCCgggggcgggGCCCCUg- -3'
miRNA:   3'- uaUgUGGGGcCCGGGGGG---------UGGGGGag -5'
31250 3' -66.9 NC_006560.1 + 56891 0.66 0.375908
Target:  5'- --cCGCgCCGGGCCCCCC-CUCgCg- -3'
miRNA:   3'- uauGUGgGGCCCGGGGGGuGGGgGag -5'
31250 3' -66.9 NC_006560.1 + 115492 0.66 0.375908
Target:  5'- ---aACCCCGa-CCCCCgCGCCCCC-Cg -3'
miRNA:   3'- uaugUGGGGCccGGGGG-GUGGGGGaG- -5'
31250 3' -66.9 NC_006560.1 + 99735 0.66 0.375908
Target:  5'- cGUACGCCgCCGGGgCCCCgACgacgCCCg- -3'
miRNA:   3'- -UAUGUGG-GGCCCgGGGGgUGg---GGGag -5'
31250 3' -66.9 NC_006560.1 + 21442 0.66 0.383662
Target:  5'- cUGCcCCCUGcccuuCCCCCUGCCCCCUg -3'
miRNA:   3'- uAUGuGGGGCcc---GGGGGGUGGGGGAg -5'
31250 3' -66.9 NC_006560.1 + 30841 0.66 0.375908
Target:  5'- -gGCGCUgggCCGGGCgccgCCCCGCCCCg-- -3'
miRNA:   3'- uaUGUGG---GGCCCGg---GGGGUGGGGgag -5'
31250 3' -66.9 NC_006560.1 + 21404 0.66 0.383662
Target:  5'- cUGCcCCCUGcccuuCCCCCUGCCCCCUg -3'
miRNA:   3'- uAUGuGGGGCcc---GGGGGGUGGGGGAg -5'
31250 3' -66.9 NC_006560.1 + 148294 0.66 0.375908
Target:  5'- cGUAgACCCCcaGGaCCCCCaggACCCCCa- -3'
miRNA:   3'- -UAUgUGGGGc-CC-GGGGGg--UGGGGGag -5'
31250 3' -66.9 NC_006560.1 + 83585 0.66 0.375908
Target:  5'- -gGCACCCCcgccgucugGGaGCCggggCCCCGCCUCCg- -3'
miRNA:   3'- uaUGUGGGG---------CC-CGG----GGGGUGGGGGag -5'
31250 3' -66.9 NC_006560.1 + 145752 0.66 0.423987
Target:  5'- -cGCGCCCCc-GCCCggCCGCCCCC-Cg -3'
miRNA:   3'- uaUGUGGGGccCGGGg-GGUGGGGGaG- -5'
31250 3' -66.9 NC_006560.1 + 750 0.66 0.375908
Target:  5'- -cGCgGCCCCGu-CCCCCC-CCCCCg- -3'
miRNA:   3'- uaUG-UGGGGCccGGGGGGuGGGGGag -5'
31250 3' -66.9 NC_006560.1 + 54050 0.66 0.378997
Target:  5'- cUACGgCUgGGGCgacucgccccucuucUCCCCGCCCCCg- -3'
miRNA:   3'- uAUGUgGGgCCCG---------------GGGGGUGGGGGag -5'
31250 3' -66.9 NC_006560.1 + 132441 0.66 0.380547
Target:  5'- --cCACCCCuuuuccccaaacGCaCCCCCACCCCCg- -3'
miRNA:   3'- uauGUGGGGcc----------CG-GGGGGUGGGGGag -5'
31250 3' -66.9 NC_006560.1 + 21518 0.66 0.383662
Target:  5'- cUGCcCCCUGcccuuCCCCCUGCCCCCUg -3'
miRNA:   3'- uAUGuGGGGCcc---GGGGGGUGGGGGAg -5'
31250 3' -66.9 NC_006560.1 + 21366 0.66 0.383662
Target:  5'- cUGCcCCCUGcccuuCCCCCUGCCCCCUg -3'
miRNA:   3'- uAUGuGGGGCcc---GGGGGGUGGGGGAg -5'
31250 3' -66.9 NC_006560.1 + 21556 0.66 0.383662
Target:  5'- cUGCcCCCUGcccuuCCCCCUGCCCCCUg -3'
miRNA:   3'- uAUGuGGGGCcc---GGGGGGUGGGGGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.