miRNA display CGI


Results 1 - 20 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31250 5' -51.6 NC_006560.1 + 150351 0.75 0.695498
Target:  5'- gGGGCGGuucGGcGGCGGGggGGgu-GCGu -3'
miRNA:   3'- -CCCGCUu--CCaCCGCCCuuUCaauUGU- -5'
31250 5' -51.6 NC_006560.1 + 147988 0.66 0.988193
Target:  5'- cGGCGucGGaGGCGGGgcGGUc-GCGg -3'
miRNA:   3'- cCCGCuuCCaCCGCCCuuUCAauUGU- -5'
31250 5' -51.6 NC_006560.1 + 147913 0.78 0.528584
Target:  5'- gGGGCGggGGcGG-GGGAGAGggGGCc -3'
miRNA:   3'- -CCCGCuuCCaCCgCCCUUUCaaUUGu -5'
31250 5' -51.6 NC_006560.1 + 147373 0.71 0.885775
Target:  5'- gGGGUGggGG-GuGCGGGggGGgcgGAgGg -3'
miRNA:   3'- -CCCGCuuCCaC-CGCCCuuUCaa-UUgU- -5'
31250 5' -51.6 NC_006560.1 + 147289 0.72 0.839117
Target:  5'- cGGGCGggGGgcucUGGCGGGcgccg-GGCGg -3'
miRNA:   3'- -CCCGCuuCC----ACCGCCCuuucaaUUGU- -5'
31250 5' -51.6 NC_006560.1 + 147056 0.73 0.80394
Target:  5'- cGGCGggGGgaGGCGGGcggcGAGUcGGCGa -3'
miRNA:   3'- cCCGCuuCCa-CCGCCCu---UUCAaUUGU- -5'
31250 5' -51.6 NC_006560.1 + 146960 0.66 0.990911
Target:  5'- aGGGcCGggGGccgggccugGGCGGGugGGcggGGCAu -3'
miRNA:   3'- -CCC-GCuuCCa--------CCGCCCuuUCaa-UUGU- -5'
31250 5' -51.6 NC_006560.1 + 146462 0.67 0.98091
Target:  5'- cGGCGGAGGa-GCGGGggGcggAGCGg -3'
miRNA:   3'- cCCGCUUCCacCGCCCuuUcaaUUGU- -5'
31250 5' -51.6 NC_006560.1 + 146401 0.7 0.899487
Target:  5'- gGGGCGGAGc-GGCGGGcGGAGgcggAGCGg -3'
miRNA:   3'- -CCCGCUUCcaCCGCCC-UUUCaa--UUGU- -5'
31250 5' -51.6 NC_006560.1 + 146064 0.68 0.964338
Target:  5'- gGGGCGGccucgGGGaGGCGGGAgcGgcgGGCc -3'
miRNA:   3'- -CCCGCU-----UCCaCCGCCCUuuCaa-UUGu -5'
31250 5' -51.6 NC_006560.1 + 143695 0.7 0.918207
Target:  5'- aGGgGAGGG-GGCGGGAcGAGgcgagAGCGg -3'
miRNA:   3'- cCCgCUUCCaCCGCCCU-UUCaa---UUGU- -5'
31250 5' -51.6 NC_006560.1 + 142673 0.71 0.885775
Target:  5'- cGGGUGAGGGgcGGCGGcGGaccgGAGggGGCGc -3'
miRNA:   3'- -CCCGCUUCCa-CCGCC-CU----UUCaaUUGU- -5'
31250 5' -51.6 NC_006560.1 + 141721 1.12 0.005291
Target:  5'- gGGGCGAAGGUGGCGGGAAAGUUAACAa -3'
miRNA:   3'- -CCCGCUUCCACCGCCCUUUCAAUUGU- -5'
31250 5' -51.6 NC_006560.1 + 141637 0.7 0.918207
Target:  5'- gGGGgGAAGGgacggcaGGgGGGAAAGaaAACAc -3'
miRNA:   3'- -CCCgCUUCCa------CCgCCCUUUCaaUUGU- -5'
31250 5' -51.6 NC_006560.1 + 140476 0.76 0.632621
Target:  5'- cGGGcCGggGG-GGCGGaGGAGGUgggGGCGg -3'
miRNA:   3'- -CCC-GCuuCCaCCGCC-CUUUCAa--UUGU- -5'
31250 5' -51.6 NC_006560.1 + 139544 0.68 0.964338
Target:  5'- gGGGCGggGGcggaagGGCGuGGu-GGgcGACGa -3'
miRNA:   3'- -CCCGCuuCCa-----CCGC-CCuuUCaaUUGU- -5'
31250 5' -51.6 NC_006560.1 + 139312 0.68 0.964338
Target:  5'- uGGGCGccucGGGc-GCGGGAGAGgcgGGCGc -3'
miRNA:   3'- -CCCGCu---UCCacCGCCCUUUCaa-UUGU- -5'
31250 5' -51.6 NC_006560.1 + 137246 0.67 0.978417
Target:  5'- gGGGCGcGGGcGGCGGGcgacgccGAGUUcccggagGACGa -3'
miRNA:   3'- -CCCGCuUCCaCCGCCCu------UUCAA-------UUGU- -5'
31250 5' -51.6 NC_006560.1 + 137168 0.72 0.830601
Target:  5'- gGGGCGGAGGgcgcggagGGCGcGGAGGGc--GCGg -3'
miRNA:   3'- -CCCGCUUCCa-------CCGC-CCUUUCaauUGU- -5'
31250 5' -51.6 NC_006560.1 + 135994 0.69 0.944366
Target:  5'- uGGCGGccGGG-GGCGGGAccGagGACGg -3'
miRNA:   3'- cCCGCU--UCCaCCGCCCUuuCaaUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.