Results 61 - 80 of 165 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
31252 | 3' | -55.1 | NC_006560.1 | + | 14189 | 0.67 | 0.903721 |
Target: 5'- uGGAGAaacGCccaggGCGUGGGGuggucgggcggGgCGCCCg -3' miRNA: 3'- -CCUCU---CGuaaa-CGUACCCC-----------UgGCGGG- -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 11100 | 0.67 | 0.8999 |
Target: 5'- gGGGGGGCGgaggaggGCGggggggGGGGGCUcagcgggcgucgaggGCCCc -3' miRNA: 3'- -CCUCUCGUaaa----CGUa-----CCCCUGG---------------CGGG- -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 127282 | 0.67 | 0.883783 |
Target: 5'- -cGGGGCGUccaggUGCG-GGGGugCGgCCa -3' miRNA: 3'- ccUCUCGUAa----ACGUaCCCCugGCgGG- -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 15764 | 0.68 | 0.861824 |
Target: 5'- cGGGGGCGacuccggGCccGGGGGCCggcaggGCCCg -3' miRNA: 3'- cCUCUCGUaaa----CGuaCCCCUGG------CGGG- -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 34068 | 0.68 | 0.854078 |
Target: 5'- aGGGGGGCGagggGaCGaggGGGGcACCGCCUc -3' miRNA: 3'- -CCUCUCGUaaa-C-GUa--CCCC-UGGCGGG- -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 83349 | 0.68 | 0.837986 |
Target: 5'- aGGAGGGCGcggGCGgcggcccGGGGCCccaGCCCu -3' miRNA: 3'- -CCUCUCGUaaaCGUac-----CCCUGG---CGGG- -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 12432 | 0.68 | 0.837986 |
Target: 5'- cGGGGAaC---UGCGUcGGGGcgGCCGCCCc -3' miRNA: 3'- -CCUCUcGuaaACGUA-CCCC--UGGCGGG- -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 50420 | 0.68 | 0.84613 |
Target: 5'- cGGGGGCGgagUGCccccGGGcCCGCCCc -3' miRNA: 3'- cCUCUCGUaa-ACGuac-CCCuGGCGGG- -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 100178 | 0.68 | 0.84613 |
Target: 5'- uGGAGAGCAgc-GCGcGGGuGAgCGUCUc -3' miRNA: 3'- -CCUCUCGUaaaCGUaCCC-CUgGCGGG- -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 26884 | 0.68 | 0.849333 |
Target: 5'- gGGAGAGCGagaccgacggggGCcgggacgGGGGugacugGCCGCCCg -3' miRNA: 3'- -CCUCUCGUaaa---------CGua-----CCCC------UGGCGGG- -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 111965 | 0.68 | 0.861824 |
Target: 5'- -uGGAGCGcUUUGCGgcccacgcgGGGGACCugGUCCc -3' miRNA: 3'- ccUCUCGU-AAACGUa--------CCCCUGG--CGGG- -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 5672 | 0.68 | 0.861824 |
Target: 5'- cGGGGcGCGgggGCGgccGGcGGcGCCGCCCg -3' miRNA: 3'- -CCUCuCGUaaaCGUa--CC-CC-UGGCGGG- -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 85527 | 0.68 | 0.861824 |
Target: 5'- cGGGGGCGcUUGgG-GGGGGCgggggCGCCCg -3' miRNA: 3'- cCUCUCGUaAACgUaCCCCUG-----GCGGG- -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 51666 | 0.68 | 0.861824 |
Target: 5'- cGGuacGCGUgcgUGCuccGGGcGGCCGCCCc -3' miRNA: 3'- -CCucuCGUAa--ACGua-CCC-CUGGCGGG- -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 141780 | 0.68 | 0.86936 |
Target: 5'- cGAGAGCGgccGCGUGuaaacGGACaGCCCg -3' miRNA: 3'- cCUCUCGUaaaCGUACc----CCUGgCGGG- -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 90341 | 0.68 | 0.876682 |
Target: 5'- -uGGAcGCcgUcGCGcGGGcGGCCGCCCa -3' miRNA: 3'- ccUCU-CGuaAaCGUaCCC-CUGGCGGG- -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 17170 | 0.68 | 0.876682 |
Target: 5'- cGGGAGCAccagGCAcGuGaGGCCGCCCa -3' miRNA: 3'- cCUCUCGUaaa-CGUaCcC-CUGGCGGG- -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 149363 | 0.68 | 0.86936 |
Target: 5'- cGGGGAGgA---GCcgGGcGGcGCCGCCCc -3' miRNA: 3'- -CCUCUCgUaaaCGuaCC-CC-UGGCGGG- -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 108511 | 0.68 | 0.876682 |
Target: 5'- gGGAGGGCGgccggcgGCGggcccGGGGGCgCGUCg -3' miRNA: 3'- -CCUCUCGUaaa----CGUa----CCCCUG-GCGGg -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 122008 | 0.68 | 0.86936 |
Target: 5'- aGGAGAcgcugcggcuGCAccgggaggGCGUGGGGACCcaggaccCCCg -3' miRNA: 3'- -CCUCU----------CGUaaa-----CGUACCCCUGGc------GGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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