miRNA display CGI


Results 81 - 100 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31252 3' -55.1 NC_006560.1 + 141780 0.68 0.86936
Target:  5'- cGAGAGCGgccGCGUGuaaacGGACaGCCCg -3'
miRNA:   3'- cCUCUCGUaaaCGUACc----CCUGgCGGG- -5'
31252 3' -55.1 NC_006560.1 + 34068 0.68 0.854078
Target:  5'- aGGGGGGCGagggGaCGaggGGGGcACCGCCUc -3'
miRNA:   3'- -CCUCUCGUaaa-C-GUa--CCCC-UGGCGGG- -5'
31252 3' -55.1 NC_006560.1 + 58232 0.68 0.854078
Target:  5'- -cGGAGCGacggggGCc-GGGGGCCGCCg -3'
miRNA:   3'- ccUCUCGUaaa---CGuaCCCCUGGCGGg -5'
31252 3' -55.1 NC_006560.1 + 50420 0.68 0.84613
Target:  5'- cGGGGGCGgagUGCccccGGGcCCGCCCc -3'
miRNA:   3'- cCUCUCGUaa-ACGuac-CCCuGGCGGG- -5'
31252 3' -55.1 NC_006560.1 + 99001 0.68 0.879549
Target:  5'- -aAGAGCcggUGCGuuuauuguUGGGGAgugggggcgccccuaCCGCCCg -3'
miRNA:   3'- ccUCUCGuaaACGU--------ACCCCU---------------GGCGGG- -5'
31252 3' -55.1 NC_006560.1 + 38110 0.68 0.837986
Target:  5'- uGGGGcGGCGUUUGUG-GGGGcCCGCa- -3'
miRNA:   3'- -CCUC-UCGUAAACGUaCCCCuGGCGgg -5'
31252 3' -55.1 NC_006560.1 + 57025 0.68 0.837986
Target:  5'- aGGAG-GCAg--GCGUGGG---CGCCCa -3'
miRNA:   3'- -CCUCuCGUaaaCGUACCCcugGCGGG- -5'
31252 3' -55.1 NC_006560.1 + 83349 0.68 0.837986
Target:  5'- aGGAGGGCGcggGCGgcggcccGGGGCCccaGCCCu -3'
miRNA:   3'- -CCUCUCGUaaaCGUac-----CCCUGG---CGGG- -5'
31252 3' -55.1 NC_006560.1 + 12432 0.68 0.837986
Target:  5'- cGGGGAaC---UGCGUcGGGGcgGCCGCCCc -3'
miRNA:   3'- -CCUCUcGuaaACGUA-CCCC--UGGCGGG- -5'
31252 3' -55.1 NC_006560.1 + 100178 0.68 0.84613
Target:  5'- uGGAGAGCAgc-GCGcGGGuGAgCGUCUc -3'
miRNA:   3'- -CCUCUCGUaaaCGUaCCC-CUgGCGGG- -5'
31252 3' -55.1 NC_006560.1 + 26884 0.68 0.849333
Target:  5'- gGGAGAGCGagaccgacggggGCcgggacgGGGGugacugGCCGCCCg -3'
miRNA:   3'- -CCUCUCGUaaa---------CGua-----CCCC------UGGCGGG- -5'
31252 3' -55.1 NC_006560.1 + 53980 0.68 0.854078
Target:  5'- -uGGAGgAg--GCcgGGGaGCCGCCCa -3'
miRNA:   3'- ccUCUCgUaaaCGuaCCCcUGGCGGG- -5'
31252 3' -55.1 NC_006560.1 + 20549 0.69 0.79459
Target:  5'- cGAGGGCGggggGC-UGGGGuuCGCCg -3'
miRNA:   3'- cCUCUCGUaaa-CGuACCCCugGCGGg -5'
31252 3' -55.1 NC_006560.1 + 56066 0.69 0.79459
Target:  5'- --cGAGUAca-GCggGGGGugCGCCCc -3'
miRNA:   3'- ccuCUCGUaaaCGuaCCCCugGCGGG- -5'
31252 3' -55.1 NC_006560.1 + 32201 0.69 0.802705
Target:  5'- gGGAGAGCA-------GGGGACagaGCCCc -3'
miRNA:   3'- -CCUCUCGUaaacguaCCCCUGg--CGGG- -5'
31252 3' -55.1 NC_006560.1 + 135562 0.69 0.812452
Target:  5'- cGGGAGCug--GC--GGGGcACCGCCUg -3'
miRNA:   3'- cCUCUCGuaaaCGuaCCCC-UGGCGGG- -5'
31252 3' -55.1 NC_006560.1 + 141479 0.69 0.821139
Target:  5'- uGAGuAGCucgagggGCGUGGGGcCCGCUg -3'
miRNA:   3'- cCUC-UCGuaaa---CGUACCCCuGGCGGg -5'
31252 3' -55.1 NC_006560.1 + 119213 0.69 0.821139
Target:  5'- cGGcGGGGCGaccgUGCGgacgacGGACCGCCCa -3'
miRNA:   3'- -CC-UCUCGUaa--ACGUacc---CCUGGCGGG- -5'
31252 3' -55.1 NC_006560.1 + 1510 0.69 0.829653
Target:  5'- cGGGAGCGcgUGCAUcGGGccccgggcGCgCGCCCg -3'
miRNA:   3'- cCUCUCGUaaACGUAcCCC--------UG-GCGGG- -5'
31252 3' -55.1 NC_006560.1 + 140273 0.69 0.821139
Target:  5'- cGAGGGCGg--GCGgccggcgGGGGuAUCGUCCa -3'
miRNA:   3'- cCUCUCGUaaaCGUa------CCCC-UGGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.