miRNA display CGI


Results 81 - 100 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31252 3' -55.1 NC_006560.1 + 17170 0.68 0.876682
Target:  5'- cGGGAGCAccagGCAcGuGaGGCCGCCCa -3'
miRNA:   3'- cCUCUCGUaaa-CGUaCcC-CUGGCGGG- -5'
31252 3' -55.1 NC_006560.1 + 87874 0.68 0.876682
Target:  5'- uGGGGcGCGg--GUggGGGGGCgCGCCg -3'
miRNA:   3'- -CCUCuCGUaaaCGuaCCCCUG-GCGGg -5'
31252 3' -55.1 NC_006560.1 + 105592 0.68 0.876682
Target:  5'- cGGGGGGCGcc-GCcccGGaGGCCGCCCc -3'
miRNA:   3'- -CCUCUCGUaaaCGuacCC-CUGGCGGG- -5'
31252 3' -55.1 NC_006560.1 + 108511 0.68 0.876682
Target:  5'- gGGAGGGCGgccggcgGCGggcccGGGGGCgCGUCg -3'
miRNA:   3'- -CCUCUCGUaaa----CGUa----CCCCUG-GCGGg -5'
31252 3' -55.1 NC_006560.1 + 119765 0.68 0.876682
Target:  5'- cGGGGGCGcugUGCcggGUGGcGGugcccCCGCCCg -3'
miRNA:   3'- cCUCUCGUaa-ACG---UACC-CCu----GGCGGG- -5'
31252 3' -55.1 NC_006560.1 + 146509 0.68 0.876682
Target:  5'- gGGGGAGCugc-GCcgGGcGGGCCGgCg -3'
miRNA:   3'- -CCUCUCGuaaaCGuaCC-CCUGGCgGg -5'
31252 3' -55.1 NC_006560.1 + 111965 0.68 0.861824
Target:  5'- -uGGAGCGcUUUGCGgcccacgcgGGGGACCugGUCCc -3'
miRNA:   3'- ccUCUCGU-AAACGUa--------CCCCUGG--CGGG- -5'
31252 3' -55.1 NC_006560.1 + 85527 0.68 0.861824
Target:  5'- cGGGGGCGcUUGgG-GGGGGCgggggCGCCCg -3'
miRNA:   3'- cCUCUCGUaAACgUaCCCCUG-----GCGGG- -5'
31252 3' -55.1 NC_006560.1 + 57025 0.68 0.837986
Target:  5'- aGGAG-GCAg--GCGUGGG---CGCCCa -3'
miRNA:   3'- -CCUCuCGUaaaCGUACCCcugGCGGG- -5'
31252 3' -55.1 NC_006560.1 + 83349 0.68 0.837986
Target:  5'- aGGAGGGCGcggGCGgcggcccGGGGCCccaGCCCu -3'
miRNA:   3'- -CCUCUCGUaaaCGUac-----CCCUGG---CGGG- -5'
31252 3' -55.1 NC_006560.1 + 12432 0.68 0.837986
Target:  5'- cGGGGAaC---UGCGUcGGGGcgGCCGCCCc -3'
miRNA:   3'- -CCUCUcGuaaACGUA-CCCC--UGGCGGG- -5'
31252 3' -55.1 NC_006560.1 + 50420 0.68 0.84613
Target:  5'- cGGGGGCGgagUGCccccGGGcCCGCCCc -3'
miRNA:   3'- cCUCUCGUaa-ACGuac-CCCuGGCGGG- -5'
31252 3' -55.1 NC_006560.1 + 100178 0.68 0.84613
Target:  5'- uGGAGAGCAgc-GCGcGGGuGAgCGUCUc -3'
miRNA:   3'- -CCUCUCGUaaaCGUaCCC-CUgGCGGG- -5'
31252 3' -55.1 NC_006560.1 + 26884 0.68 0.849333
Target:  5'- gGGAGAGCGagaccgacggggGCcgggacgGGGGugacugGCCGCCCg -3'
miRNA:   3'- -CCUCUCGUaaa---------CGua-----CCCC------UGGCGGG- -5'
31252 3' -55.1 NC_006560.1 + 53980 0.68 0.854078
Target:  5'- -uGGAGgAg--GCcgGGGaGCCGCCCa -3'
miRNA:   3'- ccUCUCgUaaaCGuaCCCcUGGCGGG- -5'
31252 3' -55.1 NC_006560.1 + 58232 0.68 0.854078
Target:  5'- -cGGAGCGacggggGCc-GGGGGCCGCCg -3'
miRNA:   3'- ccUCUCGUaaa---CGuaCCCCUGGCGGg -5'
31252 3' -55.1 NC_006560.1 + 34068 0.68 0.854078
Target:  5'- aGGGGGGCGagggGaCGaggGGGGcACCGCCUc -3'
miRNA:   3'- -CCUCUCGUaaa-C-GUa--CCCC-UGGCGGG- -5'
31252 3' -55.1 NC_006560.1 + 15764 0.68 0.861824
Target:  5'- cGGGGGCGacuccggGCccGGGGGCCggcaggGCCCg -3'
miRNA:   3'- cCUCUCGUaaa----CGuaCCCCUGG------CGGG- -5'
31252 3' -55.1 NC_006560.1 + 21001 0.68 0.861824
Target:  5'- gGGaAGGGCGgg-GCGgcGGGcCCGCCCc -3'
miRNA:   3'- -CC-UCUCGUaaaCGUacCCCuGGCGGG- -5'
31252 3' -55.1 NC_006560.1 + 32601 0.68 0.861824
Target:  5'- cGGGGGGC--------GGGGGCUGCCCc -3'
miRNA:   3'- -CCUCUCGuaaacguaCCCCUGGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.