miRNA display CGI


Results 41 - 60 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31252 3' -55.1 NC_006560.1 + 25832 0.71 0.717955
Target:  5'- gGGAGAGgGgacgGCGUGGccGGGCgcgCGCCCg -3'
miRNA:   3'- -CCUCUCgUaaa-CGUACC--CCUG---GCGGG- -5'
31252 3' -55.1 NC_006560.1 + 58380 0.71 0.717955
Target:  5'- gGGGGAGCGgcgcccGCGUcggcgcccccGGGGGCCGCg- -3'
miRNA:   3'- -CCUCUCGUaaa---CGUA----------CCCCUGGCGgg -5'
31252 3' -55.1 NC_006560.1 + 93612 0.71 0.717955
Target:  5'- cGGAGGGCGUUuucgUGCG-GGGGAagaugagCGCgCCa -3'
miRNA:   3'- -CCUCUCGUAA----ACGUaCCCCUg------GCG-GG- -5'
31252 3' -55.1 NC_006560.1 + 32924 0.71 0.727892
Target:  5'- cGGGGGCcgaggGCA-GGGGGCCGUCg -3'
miRNA:   3'- cCUCUCGuaaa-CGUaCCCCUGGCGGg -5'
31252 3' -55.1 NC_006560.1 + 34205 0.71 0.727892
Target:  5'- cGGGGGGaCGgggGCG-GGGGAcgccgggcgcCCGCCCa -3'
miRNA:   3'- -CCUCUC-GUaaaCGUaCCCCU----------GGCGGG- -5'
31252 3' -55.1 NC_006560.1 + 112780 0.71 0.727892
Target:  5'- aGGAGuGCAUggcggUGUAccGGGACCucgugGCCCa -3'
miRNA:   3'- -CCUCuCGUAa----ACGUacCCCUGG-----CGGG- -5'
31252 3' -55.1 NC_006560.1 + 119356 0.71 0.731844
Target:  5'- gGGAGAGCuacgccuaccucUGCcUGGGGuucaACCGCCg -3'
miRNA:   3'- -CCUCUCGuaa---------ACGuACCCC----UGGCGGg -5'
31252 3' -55.1 NC_006560.1 + 128661 0.7 0.737745
Target:  5'- cGGGGAGCugcucgUGUAUauggacggggcGGGGGCgCGCUCg -3'
miRNA:   3'- -CCUCUCGuaa---ACGUA-----------CCCCUG-GCGGG- -5'
31252 3' -55.1 NC_006560.1 + 116130 0.7 0.737745
Target:  5'- uGGGGGcgaacGCGUggugcGCGUGGGGggugGCCGCCa -3'
miRNA:   3'- -CCUCU-----CGUAaa---CGUACCCC----UGGCGGg -5'
31252 3' -55.1 NC_006560.1 + 28533 0.7 0.747505
Target:  5'- uGAuGGGCuccccGCGcgccgccccUGGGGGCCGCCCc -3'
miRNA:   3'- cCU-CUCGuaaa-CGU---------ACCCCUGGCGGG- -5'
31252 3' -55.1 NC_006560.1 + 33835 0.7 0.757164
Target:  5'- cGGGGGucggccGCGg--GCGUGGGGGCgCGCgCg -3'
miRNA:   3'- -CCUCU------CGUaaaCGUACCCCUG-GCGgG- -5'
31252 3' -55.1 NC_006560.1 + 70622 0.7 0.766711
Target:  5'- gGGGGAGCAcgUGCcgGGGuuCUGCUUc -3'
miRNA:   3'- -CCUCUCGUaaACGuaCCCcuGGCGGG- -5'
31252 3' -55.1 NC_006560.1 + 81471 0.7 0.766711
Target:  5'- gGGAGAGCGgg-----GGGGAgCGCCg -3'
miRNA:   3'- -CCUCUCGUaaacguaCCCCUgGCGGg -5'
31252 3' -55.1 NC_006560.1 + 15054 0.7 0.766711
Target:  5'- cGGGGGGCGacgGCGUcgguggggggcGGGGGCUcugGCCCc -3'
miRNA:   3'- -CCUCUCGUaaaCGUA-----------CCCCUGG---CGGG- -5'
31252 3' -55.1 NC_006560.1 + 66715 0.7 0.776137
Target:  5'- gGGGGGGCGUgcUGCcgGGccaGGGCCgggaagucGCCCg -3'
miRNA:   3'- -CCUCUCGUAa-ACGuaCC---CCUGG--------CGGG- -5'
31252 3' -55.1 NC_006560.1 + 16377 0.7 0.785433
Target:  5'- gGGGGGGCAUggcgGCGcgGGcGGGCguCGCCUg -3'
miRNA:   3'- -CCUCUCGUAaa--CGUa-CC-CCUG--GCGGG- -5'
31252 3' -55.1 NC_006560.1 + 33405 0.7 0.785433
Target:  5'- aGGGGGGCGcggGC--GGGGAgCGCCg -3'
miRNA:   3'- -CCUCUCGUaaaCGuaCCCCUgGCGGg -5'
31252 3' -55.1 NC_006560.1 + 50628 0.7 0.785433
Target:  5'- cGuGGGCGacaUGCAcaUGGGGGCC-CCCg -3'
miRNA:   3'- cCuCUCGUaa-ACGU--ACCCCUGGcGGG- -5'
31252 3' -55.1 NC_006560.1 + 95074 0.7 0.785433
Target:  5'- cGGAGAGCugg-GCGgacgucgcgGGccGGGCCGCCg -3'
miRNA:   3'- -CCUCUCGuaaaCGUa--------CC--CCUGGCGGg -5'
31252 3' -55.1 NC_006560.1 + 133185 0.7 0.785433
Target:  5'- uGAGGGCGUccGC---GGGGCCGCCg -3'
miRNA:   3'- cCUCUCGUAaaCGuacCCCUGGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.