miRNA display CGI


Results 61 - 80 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31252 3' -55.1 NC_006560.1 + 56066 0.69 0.79459
Target:  5'- --cGAGUAca-GCggGGGGugCGCCCc -3'
miRNA:   3'- ccuCUCGUaaaCGuaCCCCugGCGGG- -5'
31252 3' -55.1 NC_006560.1 + 20549 0.69 0.79459
Target:  5'- cGAGGGCGggggGC-UGGGGuuCGCCg -3'
miRNA:   3'- cCUCUCGUaaa-CGuACCCCugGCGGg -5'
31252 3' -55.1 NC_006560.1 + 32201 0.69 0.802705
Target:  5'- gGGAGAGCA-------GGGGACagaGCCCc -3'
miRNA:   3'- -CCUCUCGUaaacguaCCCCUGg--CGGG- -5'
31252 3' -55.1 NC_006560.1 + 36104 0.69 0.803599
Target:  5'- cGGGGccgcGGCGg--GCAccGGGGCCGCCg -3'
miRNA:   3'- -CCUC----UCGUaaaCGUacCCCUGGCGGg -5'
31252 3' -55.1 NC_006560.1 + 27073 0.69 0.807159
Target:  5'- cGGGGcugcGCGUUgcgGCcUGGGGACCGaagcgggccucgcgaCCCg -3'
miRNA:   3'- -CCUCu---CGUAAa--CGuACCCCUGGC---------------GGG- -5'
31252 3' -55.1 NC_006560.1 + 135562 0.69 0.812452
Target:  5'- cGGGAGCug--GC--GGGGcACCGCCUg -3'
miRNA:   3'- cCUCUCGuaaaCGuaCCCC-UGGCGGG- -5'
31252 3' -55.1 NC_006560.1 + 15920 0.69 0.812452
Target:  5'- -cAGGGCGUg-GCccguUGGGGgggaGCCGCCCu -3'
miRNA:   3'- ccUCUCGUAaaCGu---ACCCC----UGGCGGG- -5'
31252 3' -55.1 NC_006560.1 + 5707 0.69 0.812452
Target:  5'- aGGAucGCAUUaGCAUGcGGccggcggcGCCGCCCg -3'
miRNA:   3'- -CCUcuCGUAAaCGUACcCC--------UGGCGGG- -5'
31252 3' -55.1 NC_006560.1 + 141479 0.69 0.821139
Target:  5'- uGAGuAGCucgagggGCGUGGGGcCCGCUg -3'
miRNA:   3'- cCUC-UCGuaaa---CGUACCCCuGGCGGg -5'
31252 3' -55.1 NC_006560.1 + 119213 0.69 0.821139
Target:  5'- cGGcGGGGCGaccgUGCGgacgacGGACCGCCCa -3'
miRNA:   3'- -CC-UCUCGUaa--ACGUacc---CCUGGCGGG- -5'
31252 3' -55.1 NC_006560.1 + 140273 0.69 0.821139
Target:  5'- cGAGGGCGg--GCGgccggcgGGGGuAUCGUCCa -3'
miRNA:   3'- cCUCUCGUaaaCGUa------CCCC-UGGCGGG- -5'
31252 3' -55.1 NC_006560.1 + 74934 0.69 0.829653
Target:  5'- cGAGAGCAcg-GuCGaGGcGGCCGCCCg -3'
miRNA:   3'- cCUCUCGUaaaC-GUaCCcCUGGCGGG- -5'
31252 3' -55.1 NC_006560.1 + 1510 0.69 0.829653
Target:  5'- cGGGAGCGcgUGCAUcGGGccccgggcGCgCGCCCg -3'
miRNA:   3'- cCUCUCGUaaACGUAcCCC--------UG-GCGGG- -5'
31252 3' -55.1 NC_006560.1 + 38110 0.68 0.837986
Target:  5'- uGGGGcGGCGUUUGUG-GGGGcCCGCa- -3'
miRNA:   3'- -CCUC-UCGUAAACGUaCCCCuGGCGgg -5'
31252 3' -55.1 NC_006560.1 + 57025 0.68 0.837986
Target:  5'- aGGAG-GCAg--GCGUGGG---CGCCCa -3'
miRNA:   3'- -CCUCuCGUaaaCGUACCCcugGCGGG- -5'
31252 3' -55.1 NC_006560.1 + 83349 0.68 0.837986
Target:  5'- aGGAGGGCGcggGCGgcggcccGGGGCCccaGCCCu -3'
miRNA:   3'- -CCUCUCGUaaaCGUac-----CCCUGG---CGGG- -5'
31252 3' -55.1 NC_006560.1 + 12432 0.68 0.837986
Target:  5'- cGGGGAaC---UGCGUcGGGGcgGCCGCCCc -3'
miRNA:   3'- -CCUCUcGuaaACGUA-CCCC--UGGCGGG- -5'
31252 3' -55.1 NC_006560.1 + 50420 0.68 0.84613
Target:  5'- cGGGGGCGgagUGCccccGGGcCCGCCCc -3'
miRNA:   3'- cCUCUCGUaa-ACGuac-CCCuGGCGGG- -5'
31252 3' -55.1 NC_006560.1 + 100178 0.68 0.84613
Target:  5'- uGGAGAGCAgc-GCGcGGGuGAgCGUCUc -3'
miRNA:   3'- -CCUCUCGUaaaCGUaCCC-CUgGCGGG- -5'
31252 3' -55.1 NC_006560.1 + 26884 0.68 0.849333
Target:  5'- gGGAGAGCGagaccgacggggGCcgggacgGGGGugacugGCCGCCCg -3'
miRNA:   3'- -CCUCUCGUaaa---------CGua-----CCCC------UGGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.