miRNA display CGI


Results 61 - 80 of 165 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31252 3' -55.1 NC_006560.1 + 127282 0.67 0.883783
Target:  5'- -cGGGGCGUccaggUGCG-GGGGugCGgCCa -3'
miRNA:   3'- ccUCUCGUAa----ACGUaCCCCugGCgGG- -5'
31252 3' -55.1 NC_006560.1 + 140482 0.67 0.883783
Target:  5'- gGGGGGGCGgagGagGUGGGGGCgGCg- -3'
miRNA:   3'- -CCUCUCGUaaaCg-UACCCCUGgCGgg -5'
31252 3' -55.1 NC_006560.1 + 82502 0.67 0.883783
Target:  5'- cGAcAGCAgcgcGCAgucGGGGAUCGCCUc -3'
miRNA:   3'- cCUcUCGUaaa-CGUa--CCCCUGGCGGG- -5'
31252 3' -55.1 NC_006560.1 + 99001 0.68 0.879549
Target:  5'- -aAGAGCcggUGCGuuuauuguUGGGGAgugggggcgccccuaCCGCCCg -3'
miRNA:   3'- ccUCUCGuaaACGU--------ACCCCU---------------GGCGGG- -5'
31252 3' -55.1 NC_006560.1 + 17170 0.68 0.876682
Target:  5'- cGGGAGCAccagGCAcGuGaGGCCGCCCa -3'
miRNA:   3'- cCUCUCGUaaa-CGUaCcC-CUGGCGGG- -5'
31252 3' -55.1 NC_006560.1 + 87874 0.68 0.876682
Target:  5'- uGGGGcGCGg--GUggGGGGGCgCGCCg -3'
miRNA:   3'- -CCUCuCGUaaaCGuaCCCCUG-GCGGg -5'
31252 3' -55.1 NC_006560.1 + 90341 0.68 0.876682
Target:  5'- -uGGAcGCcgUcGCGcGGGcGGCCGCCCa -3'
miRNA:   3'- ccUCU-CGuaAaCGUaCCC-CUGGCGGG- -5'
31252 3' -55.1 NC_006560.1 + 105592 0.68 0.876682
Target:  5'- cGGGGGGCGcc-GCcccGGaGGCCGCCCc -3'
miRNA:   3'- -CCUCUCGUaaaCGuacCC-CUGGCGGG- -5'
31252 3' -55.1 NC_006560.1 + 108511 0.68 0.876682
Target:  5'- gGGAGGGCGgccggcgGCGggcccGGGGGCgCGUCg -3'
miRNA:   3'- -CCUCUCGUaaa----CGUa----CCCCUG-GCGGg -5'
31252 3' -55.1 NC_006560.1 + 119765 0.68 0.876682
Target:  5'- cGGGGGCGcugUGCcggGUGGcGGugcccCCGCCCg -3'
miRNA:   3'- cCUCUCGUaa-ACG---UACC-CCu----GGCGGG- -5'
31252 3' -55.1 NC_006560.1 + 146509 0.68 0.876682
Target:  5'- gGGGGAGCugc-GCcgGGcGGGCCGgCg -3'
miRNA:   3'- -CCUCUCGuaaaCGuaCC-CCUGGCgGg -5'
31252 3' -55.1 NC_006560.1 + 125480 0.68 0.86936
Target:  5'- aGGAgGGGCugagccUGCGccUGGGGGaCGCCCc -3'
miRNA:   3'- -CCU-CUCGuaa---ACGU--ACCCCUgGCGGG- -5'
31252 3' -55.1 NC_006560.1 + 149363 0.68 0.86936
Target:  5'- cGGGGAGgA---GCcgGGcGGcGCCGCCCc -3'
miRNA:   3'- -CCUCUCgUaaaCGuaCC-CC-UGGCGGG- -5'
31252 3' -55.1 NC_006560.1 + 141780 0.68 0.86936
Target:  5'- cGAGAGCGgccGCGUGuaaacGGACaGCCCg -3'
miRNA:   3'- cCUCUCGUaaaCGUACc----CCUGgCGGG- -5'
31252 3' -55.1 NC_006560.1 + 122008 0.68 0.86936
Target:  5'- aGGAGAcgcugcggcuGCAccgggaggGCGUGGGGACCcaggaccCCCg -3'
miRNA:   3'- -CCUCU----------CGUaaa-----CGUACCCCUGGc------GGG- -5'
31252 3' -55.1 NC_006560.1 + 51666 0.68 0.861824
Target:  5'- cGGuacGCGUgcgUGCuccGGGcGGCCGCCCc -3'
miRNA:   3'- -CCucuCGUAa--ACGua-CCC-CUGGCGGG- -5'
31252 3' -55.1 NC_006560.1 + 5672 0.68 0.861824
Target:  5'- cGGGGcGCGgggGCGgccGGcGGcGCCGCCCg -3'
miRNA:   3'- -CCUCuCGUaaaCGUa--CC-CC-UGGCGGG- -5'
31252 3' -55.1 NC_006560.1 + 85527 0.68 0.861824
Target:  5'- cGGGGGCGcUUGgG-GGGGGCgggggCGCCCg -3'
miRNA:   3'- cCUCUCGUaAACgUaCCCCUG-----GCGGG- -5'
31252 3' -55.1 NC_006560.1 + 32601 0.68 0.861824
Target:  5'- cGGGGGGC--------GGGGGCUGCCCc -3'
miRNA:   3'- -CCUCUCGuaaacguaCCCCUGGCGGG- -5'
31252 3' -55.1 NC_006560.1 + 21001 0.68 0.861824
Target:  5'- gGGaAGGGCGgg-GCGgcGGGcCCGCCCc -3'
miRNA:   3'- -CC-UCUCGUaaaCGUacCCCuGGCGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.