Results 81 - 100 of 165 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
31252 | 3' | -55.1 | NC_006560.1 | + | 15764 | 0.68 | 0.861824 |
Target: 5'- cGGGGGCGacuccggGCccGGGGGCCggcaggGCCCg -3' miRNA: 3'- cCUCUCGUaaa----CGuaCCCCUGG------CGGG- -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 5672 | 0.68 | 0.861824 |
Target: 5'- cGGGGcGCGgggGCGgccGGcGGcGCCGCCCg -3' miRNA: 3'- -CCUCuCGUaaaCGUa--CC-CC-UGGCGGG- -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 58232 | 0.68 | 0.854078 |
Target: 5'- -cGGAGCGacggggGCc-GGGGGCCGCCg -3' miRNA: 3'- ccUCUCGUaaa---CGuaCCCCUGGCGGg -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 34068 | 0.68 | 0.854078 |
Target: 5'- aGGGGGGCGagggGaCGaggGGGGcACCGCCUc -3' miRNA: 3'- -CCUCUCGUaaa-C-GUa--CCCC-UGGCGGG- -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 53980 | 0.68 | 0.854078 |
Target: 5'- -uGGAGgAg--GCcgGGGaGCCGCCCa -3' miRNA: 3'- ccUCUCgUaaaCGuaCCCcUGGCGGG- -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 26884 | 0.68 | 0.849333 |
Target: 5'- gGGAGAGCGagaccgacggggGCcgggacgGGGGugacugGCCGCCCg -3' miRNA: 3'- -CCUCUCGUaaa---------CGua-----CCCC------UGGCGGG- -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 50420 | 0.68 | 0.84613 |
Target: 5'- cGGGGGCGgagUGCccccGGGcCCGCCCc -3' miRNA: 3'- cCUCUCGUaa-ACGuac-CCCuGGCGGG- -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 100178 | 0.68 | 0.84613 |
Target: 5'- uGGAGAGCAgc-GCGcGGGuGAgCGUCUc -3' miRNA: 3'- -CCUCUCGUaaaCGUaCCC-CUgGCGGG- -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 57025 | 0.68 | 0.837986 |
Target: 5'- aGGAG-GCAg--GCGUGGG---CGCCCa -3' miRNA: 3'- -CCUCuCGUaaaCGUACCCcugGCGGG- -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 38110 | 0.68 | 0.837986 |
Target: 5'- uGGGGcGGCGUUUGUG-GGGGcCCGCa- -3' miRNA: 3'- -CCUC-UCGUAAACGUaCCCCuGGCGgg -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 83349 | 0.68 | 0.837986 |
Target: 5'- aGGAGGGCGcggGCGgcggcccGGGGCCccaGCCCu -3' miRNA: 3'- -CCUCUCGUaaaCGUac-----CCCUGG---CGGG- -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 12432 | 0.68 | 0.837986 |
Target: 5'- cGGGGAaC---UGCGUcGGGGcgGCCGCCCc -3' miRNA: 3'- -CCUCUcGuaaACGUA-CCCC--UGGCGGG- -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 1510 | 0.69 | 0.829653 |
Target: 5'- cGGGAGCGcgUGCAUcGGGccccgggcGCgCGCCCg -3' miRNA: 3'- cCUCUCGUaaACGUAcCCC--------UG-GCGGG- -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 74934 | 0.69 | 0.829653 |
Target: 5'- cGAGAGCAcg-GuCGaGGcGGCCGCCCg -3' miRNA: 3'- cCUCUCGUaaaC-GUaCCcCUGGCGGG- -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 140273 | 0.69 | 0.821139 |
Target: 5'- cGAGGGCGg--GCGgccggcgGGGGuAUCGUCCa -3' miRNA: 3'- cCUCUCGUaaaCGUa------CCCC-UGGCGGG- -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 141479 | 0.69 | 0.821139 |
Target: 5'- uGAGuAGCucgagggGCGUGGGGcCCGCUg -3' miRNA: 3'- cCUC-UCGuaaa---CGUACCCCuGGCGGg -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 119213 | 0.69 | 0.821139 |
Target: 5'- cGGcGGGGCGaccgUGCGgacgacGGACCGCCCa -3' miRNA: 3'- -CC-UCUCGUaa--ACGUacc---CCUGGCGGG- -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 135562 | 0.69 | 0.812452 |
Target: 5'- cGGGAGCug--GC--GGGGcACCGCCUg -3' miRNA: 3'- cCUCUCGuaaaCGuaCCCC-UGGCGGG- -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 15920 | 0.69 | 0.812452 |
Target: 5'- -cAGGGCGUg-GCccguUGGGGgggaGCCGCCCu -3' miRNA: 3'- ccUCUCGUAaaCGu---ACCCC----UGGCGGG- -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 5707 | 0.69 | 0.812452 |
Target: 5'- aGGAucGCAUUaGCAUGcGGccggcggcGCCGCCCg -3' miRNA: 3'- -CCUcuCGUAAaCGUACcCC--------UGGCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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