miRNA display CGI


Results 41 - 60 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31252 3' -55.1 NC_006560.1 + 28533 0.7 0.747505
Target:  5'- uGAuGGGCuccccGCGcgccgccccUGGGGGCCGCCCc -3'
miRNA:   3'- cCU-CUCGuaaa-CGU---------ACCCCUGGCGGG- -5'
31252 3' -55.1 NC_006560.1 + 28816 0.76 0.443068
Target:  5'- gGGAGAGCccggaagaucCccGGGGGCCGCCCu -3'
miRNA:   3'- -CCUCUCGuaaac-----GuaCCCCUGGCGGG- -5'
31252 3' -55.1 NC_006560.1 + 29014 0.67 0.883783
Target:  5'- uGGAcGGCcg--GCcccGGGGCCGCCCa -3'
miRNA:   3'- -CCUcUCGuaaaCGuacCCCUGGCGGG- -5'
31252 3' -55.1 NC_006560.1 + 29071 0.72 0.646838
Target:  5'- cGGcGGGGCccgccCGUcGGGGACCGCCCc -3'
miRNA:   3'- -CC-UCUCGuaaacGUA-CCCCUGGCGGG- -5'
31252 3' -55.1 NC_006560.1 + 30280 0.71 0.707945
Target:  5'- aGGGGAGgGgagUG-GUGGGGaggguguugcuGCCGCCCg -3'
miRNA:   3'- -CCUCUCgUaa-ACgUACCCC-----------UGGCGGG- -5'
31252 3' -55.1 NC_006560.1 + 32201 0.69 0.802705
Target:  5'- gGGAGAGCA-------GGGGACagaGCCCc -3'
miRNA:   3'- -CCUCUCGUaaacguaCCCCUGg--CGGG- -5'
31252 3' -55.1 NC_006560.1 + 32352 0.67 0.890659
Target:  5'- cGGGGGGCAgagggccccGCAgggacacgGGGGGCagaggGCCCc -3'
miRNA:   3'- -CCUCUCGUaaa------CGUa-------CCCCUGg----CGGG- -5'
31252 3' -55.1 NC_006560.1 + 32400 0.75 0.486033
Target:  5'- cGGGGGCGga-GgGUGGGGGCCgagGCCCg -3'
miRNA:   3'- cCUCUCGUaaaCgUACCCCUGG---CGGG- -5'
31252 3' -55.1 NC_006560.1 + 32601 0.68 0.861824
Target:  5'- cGGGGGGC--------GGGGGCUGCCCc -3'
miRNA:   3'- -CCUCUCGuaaacguaCCCCUGGCGGG- -5'
31252 3' -55.1 NC_006560.1 + 32687 0.76 0.43042
Target:  5'- aGAGGGCcgggGCcgGGGGcuCCGCCCg -3'
miRNA:   3'- cCUCUCGuaaaCGuaCCCCu-GGCGGG- -5'
31252 3' -55.1 NC_006560.1 + 32713 0.66 0.937195
Target:  5'- cGAGGGCGcgcggGCccGGGGuCCGUCg -3'
miRNA:   3'- cCUCUCGUaaa--CGuaCCCCuGGCGGg -5'
31252 3' -55.1 NC_006560.1 + 32792 0.67 0.890659
Target:  5'- gGGAGGGgGgg-GCcgGGGGcGCgGCCg -3'
miRNA:   3'- -CCUCUCgUaaaCGuaCCCC-UGgCGGg -5'
31252 3' -55.1 NC_006560.1 + 32885 0.73 0.585287
Target:  5'- cGGGGAGgcc--GCggGGGGGCgCGCCCg -3'
miRNA:   3'- -CCUCUCguaaaCGuaCCCCUG-GCGGG- -5'
31252 3' -55.1 NC_006560.1 + 32924 0.71 0.727892
Target:  5'- cGGGGGCcgaggGCA-GGGGGCCGUCg -3'
miRNA:   3'- cCUCUCGuaaa-CGUaCCCCUGGCGGg -5'
31252 3' -55.1 NC_006560.1 + 33405 0.7 0.785433
Target:  5'- aGGGGGGCGcggGC--GGGGAgCGCCg -3'
miRNA:   3'- -CCUCUCGUaaaCGuaCCCCUgGCGGg -5'
31252 3' -55.1 NC_006560.1 + 33475 0.75 0.467099
Target:  5'- aGGAGAGgcg--GCG-GGGGGCCGCCg -3'
miRNA:   3'- -CCUCUCguaaaCGUaCCCCUGGCGGg -5'
31252 3' -55.1 NC_006560.1 + 33632 0.73 0.585287
Target:  5'- gGGGGGGCGggggGCGccGGGGGCgGCCg -3'
miRNA:   3'- -CCUCUCGUaaa-CGUa-CCCCUGgCGGg -5'
31252 3' -55.1 NC_006560.1 + 33835 0.7 0.757164
Target:  5'- cGGGGGucggccGCGg--GCGUGGGGGCgCGCgCg -3'
miRNA:   3'- -CCUCU------CGUaaaCGUACCCCUG-GCGgG- -5'
31252 3' -55.1 NC_006560.1 + 34068 0.68 0.854078
Target:  5'- aGGGGGGCGagggGaCGaggGGGGcACCGCCUc -3'
miRNA:   3'- -CCUCUCGUaaa-C-GUa--CCCC-UGGCGGG- -5'
31252 3' -55.1 NC_006560.1 + 34205 0.71 0.727892
Target:  5'- cGGGGGGaCGgggGCG-GGGGAcgccgggcgcCCGCCCa -3'
miRNA:   3'- -CCUCUC-GUaaaCGUaCCCCU----------GGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.