miRNA display CGI


Results 61 - 80 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31252 3' -55.1 NC_006560.1 + 34544 0.72 0.657102
Target:  5'- gGGGGAuGUGUgUGCggGGGGGCgGCCg -3'
miRNA:   3'- -CCUCU-CGUAaACGuaCCCCUGgCGGg -5'
31252 3' -55.1 NC_006560.1 + 36104 0.69 0.803599
Target:  5'- cGGGGccgcGGCGg--GCAccGGGGCCGCCg -3'
miRNA:   3'- -CCUC----UCGUaaaCGUacCCCUGGCGGg -5'
31252 3' -55.1 NC_006560.1 + 38110 0.68 0.837986
Target:  5'- uGGGGcGGCGUUUGUG-GGGGcCCGCa- -3'
miRNA:   3'- -CCUC-UCGUAAACGUaCCCCuGGCGgg -5'
31252 3' -55.1 NC_006560.1 + 39228 0.74 0.551854
Target:  5'- gGGAGGGgcgaccgcgagcgcCAUcaGCGagggGGGGGCCGCCCu -3'
miRNA:   3'- -CCUCUC--------------GUAaaCGUa---CCCCUGGCGGG- -5'
31252 3' -55.1 NC_006560.1 + 39312 0.74 0.564965
Target:  5'- cGGGccGGGCGgg-GCgGUGGGGcgggGCCGCCCg -3'
miRNA:   3'- -CCU--CUCGUaaaCG-UACCCC----UGGCGGG- -5'
31252 3' -55.1 NC_006560.1 + 40072 0.77 0.395488
Target:  5'- gGGAGGGgAUggcgUGCgGUGGGGGCggggCGCCCg -3'
miRNA:   3'- -CCUCUCgUAa---ACG-UACCCCUG----GCGGG- -5'
31252 3' -55.1 NC_006560.1 + 40118 0.67 0.909899
Target:  5'- cGGAGAcucGCGUcguccaucUGCAUGcGGAgccCCGCCCc -3'
miRNA:   3'- -CCUCU---CGUAa-------ACGUACcCCU---GGCGGG- -5'
31252 3' -55.1 NC_006560.1 + 41050 0.66 0.937195
Target:  5'- -uAGAuGCAUcgGCggGcGGGGCuCGCCCc -3'
miRNA:   3'- ccUCU-CGUAaaCGuaC-CCCUG-GCGGG- -5'
31252 3' -55.1 NC_006560.1 + 44327 0.73 0.605745
Target:  5'- cGGGGcGCuc-UGCGgcugGGGGGCgCGCCCc -3'
miRNA:   3'- -CCUCuCGuaaACGUa---CCCCUG-GCGGG- -5'
31252 3' -55.1 NC_006560.1 + 44746 0.72 0.667346
Target:  5'- cGGAGAGCGacgUUGuCAUGGaGGACgUGgCCa -3'
miRNA:   3'- -CCUCUCGUa--AAC-GUACC-CCUG-GCgGG- -5'
31252 3' -55.1 NC_006560.1 + 45249 0.67 0.903721
Target:  5'- gGGGGGGCGUcuguggcgcgUGCG-GGGGAggUGCCCc -3'
miRNA:   3'- -CCUCUCGUAa---------ACGUaCCCCUg-GCGGG- -5'
31252 3' -55.1 NC_006560.1 + 47159 0.66 0.937195
Target:  5'- cGGAggcgccGAGCucgcgagGCGcgagGGGGGCCGCUa -3'
miRNA:   3'- -CCU------CUCGuaaa---CGUa---CCCCUGGCGGg -5'
31252 3' -55.1 NC_006560.1 + 47284 0.66 0.941932
Target:  5'- -aAGAGCGccUGCGcGGcGGACgCGCUCg -3'
miRNA:   3'- ccUCUCGUaaACGUaCC-CCUG-GCGGG- -5'
31252 3' -55.1 NC_006560.1 + 50420 0.68 0.84613
Target:  5'- cGGGGGCGgagUGCccccGGGcCCGCCCc -3'
miRNA:   3'- cCUCUCGUaa-ACGuac-CCCuGGCGGG- -5'
31252 3' -55.1 NC_006560.1 + 50628 0.7 0.785433
Target:  5'- cGuGGGCGacaUGCAcaUGGGGGCC-CCCg -3'
miRNA:   3'- cCuCUCGUaa-ACGU--ACCCCUGGcGGG- -5'
31252 3' -55.1 NC_006560.1 + 51666 0.68 0.861824
Target:  5'- cGGuacGCGUgcgUGCuccGGGcGGCCGCCCc -3'
miRNA:   3'- -CCucuCGUAa--ACGua-CCC-CUGGCGGG- -5'
31252 3' -55.1 NC_006560.1 + 53612 0.72 0.669391
Target:  5'- gGGAGAGCGUcgacucccucgGCGcccUGcggcggcucguugccGGGGCCGCCCg -3'
miRNA:   3'- -CCUCUCGUAaa---------CGU---AC---------------CCCUGGCGGG- -5'
31252 3' -55.1 NC_006560.1 + 53693 0.72 0.657102
Target:  5'- cGGcGAGCAcgUacuacacgcGCAUGGacGGGCCGCCCc -3'
miRNA:   3'- -CCuCUCGUaaA---------CGUACC--CCUGGCGGG- -5'
31252 3' -55.1 NC_006560.1 + 53980 0.68 0.854078
Target:  5'- -uGGAGgAg--GCcgGGGaGCCGCCCa -3'
miRNA:   3'- ccUCUCgUaaaCGuaCCCcUGGCGGG- -5'
31252 3' -55.1 NC_006560.1 + 56035 0.66 0.941932
Target:  5'- cGAG-GCGc-UGCGUGGGGAagGUCCc -3'
miRNA:   3'- cCUCuCGUaaACGUACCCCUggCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.