Results 81 - 100 of 165 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31252 | 3' | -55.1 | NC_006560.1 | + | 56066 | 0.69 | 0.79459 |
Target: 5'- --cGAGUAca-GCggGGGGugCGCCCc -3' miRNA: 3'- ccuCUCGUaaaCGuaCCCCugGCGGG- -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 57025 | 0.68 | 0.837986 |
Target: 5'- aGGAG-GCAg--GCGUGGG---CGCCCa -3' miRNA: 3'- -CCUCuCGUaaaCGUACCCcugGCGGG- -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 58232 | 0.68 | 0.854078 |
Target: 5'- -cGGAGCGacggggGCc-GGGGGCCGCCg -3' miRNA: 3'- ccUCUCGUaaa---CGuaCCCCUGGCGGg -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 58334 | 0.72 | 0.636562 |
Target: 5'- cGAGAGCGcgcGCuuggaggGGGGGCgCGCCCc -3' miRNA: 3'- cCUCUCGUaaaCGua-----CCCCUG-GCGGG- -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 58380 | 0.71 | 0.717955 |
Target: 5'- gGGGGAGCGgcgcccGCGUcggcgcccccGGGGGCCGCg- -3' miRNA: 3'- -CCUCUCGUaaa---CGUA----------CCCCUGGCGgg -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 64841 | 0.66 | 0.941932 |
Target: 5'- -aGGAGCAg--GC-UGGGGucgcgcgcgccgGCgCGCCCa -3' miRNA: 3'- ccUCUCGUaaaCGuACCCC------------UG-GCGGG- -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 65318 | 0.66 | 0.915839 |
Target: 5'- gGGGGuGGCGaaucaGgGUGGGGGCCgGCUCg -3' miRNA: 3'- -CCUC-UCGUaaa--CgUACCCCUGG-CGGG- -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 65745 | 0.73 | 0.585287 |
Target: 5'- uGGGGGGC--------GGGGACCGCCCu -3' miRNA: 3'- -CCUCUCGuaaacguaCCCCUGGCGGG- -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 65997 | 0.8 | 0.250116 |
Target: 5'- gGGAGAGCAc---CGUGGGGACCGCg- -3' miRNA: 3'- -CCUCUCGUaaacGUACCCCUGGCGgg -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 66335 | 0.72 | 0.667346 |
Target: 5'- cGGuGuGCGcg-GCcucGUGGGGGCCGCCg -3' miRNA: 3'- -CCuCuCGUaaaCG---UACCCCUGGCGGg -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 66715 | 0.7 | 0.776137 |
Target: 5'- gGGGGGGCGUgcUGCcgGGccaGGGCCgggaagucGCCCg -3' miRNA: 3'- -CCUCUCGUAa-ACGuaCC---CCUGG--------CGGG- -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 67148 | 0.72 | 0.657102 |
Target: 5'- gGGGGGGCGgggugGgGUGGGGAgaCGCCg -3' miRNA: 3'- -CCUCUCGUaaa--CgUACCCCUg-GCGGg -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 68927 | 0.66 | 0.92154 |
Target: 5'- aGGAGGuGC----GCGUGucGGCCGCCCu -3' miRNA: 3'- -CCUCU-CGuaaaCGUACccCUGGCGGG- -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 69263 | 0.67 | 0.883783 |
Target: 5'- uGGAGGGCuuccugGCcgcGGGcGGCgGCCCc -3' miRNA: 3'- -CCUCUCGuaaa--CGua-CCC-CUGgCGGG- -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 70316 | 0.67 | 0.890659 |
Target: 5'- cGGGGAGCGcgUGUacgccgugGUcGGGGAggcccccgaCCGCCUg -3' miRNA: 3'- -CCUCUCGUaaACG--------UA-CCCCU---------GGCGGG- -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 70622 | 0.7 | 0.766711 |
Target: 5'- gGGGGAGCAcgUGCcgGGGuuCUGCUUc -3' miRNA: 3'- -CCUCUCGUaaACGuaCCCcuGGCGGG- -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 70931 | 0.67 | 0.909899 |
Target: 5'- uGGGGGGacuacaGCcUGGGG-CCGCUCg -3' miRNA: 3'- -CCUCUCguaaa-CGuACCCCuGGCGGG- -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 71646 | 0.72 | 0.657102 |
Target: 5'- uGGAGGGCGgg-GCGUGGacgcGGGCCucggccggcggcGCCCc -3' miRNA: 3'- -CCUCUCGUaaaCGUACC----CCUGG------------CGGG- -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 73330 | 0.66 | 0.915839 |
Target: 5'- aGGAGGGCucggGCGUc--GGCCGCCUg -3' miRNA: 3'- -CCUCUCGuaaaCGUAcccCUGGCGGG- -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 74048 | 0.72 | 0.667346 |
Target: 5'- cGGGAGCugcUGCAgcgGGGGugCGaCCUg -3' miRNA: 3'- cCUCUCGuaaACGUa--CCCCugGC-GGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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