miRNA display CGI


Results 21 - 40 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31252 3' -55.1 NC_006560.1 + 133185 0.7 0.785433
Target:  5'- uGAGGGCGUccGC---GGGGCCGCCg -3'
miRNA:   3'- cCUCUCGUAaaCGuacCCCUGGCGGg -5'
31252 3' -55.1 NC_006560.1 + 131657 0.72 0.633478
Target:  5'- uGGAGGGCGUcgccggcgaggcccUgGCGggcgGGGGGCUGCuCCg -3'
miRNA:   3'- -CCUCUCGUA--------------AaCGUa---CCCCUGGCG-GG- -5'
31252 3' -55.1 NC_006560.1 + 128661 0.7 0.737745
Target:  5'- cGGGGAGCugcucgUGUAUauggacggggcGGGGGCgCGCUCg -3'
miRNA:   3'- -CCUCUCGuaa---ACGUA-----------CCCCUG-GCGGG- -5'
31252 3' -55.1 NC_006560.1 + 128283 0.72 0.677561
Target:  5'- gGGGGGGgAgg-GCcccGGGGGCgCGCCCg -3'
miRNA:   3'- -CCUCUCgUaaaCGua-CCCCUG-GCGGG- -5'
31252 3' -55.1 NC_006560.1 + 127357 0.71 0.707945
Target:  5'- cGGGGAcGCGUagaaGCA-GGGaaaGGCCGCCCg -3'
miRNA:   3'- -CCUCU-CGUAaa--CGUaCCC---CUGGCGGG- -5'
31252 3' -55.1 NC_006560.1 + 127282 0.67 0.883783
Target:  5'- -cGGGGCGUccaggUGCG-GGGGugCGgCCa -3'
miRNA:   3'- ccUCUCGUAa----ACGUaCCCCugGCgGG- -5'
31252 3' -55.1 NC_006560.1 + 126056 0.66 0.92154
Target:  5'- cGGGGGCGaugugGCAUuuucccgggaGGGGgguguucuacuACCGCCCg -3'
miRNA:   3'- cCUCUCGUaaa--CGUA----------CCCC-----------UGGCGGG- -5'
31252 3' -55.1 NC_006560.1 + 125480 0.68 0.86936
Target:  5'- aGGAgGGGCugagccUGCGccUGGGGGaCGCCCc -3'
miRNA:   3'- -CCU-CUCGuaa---ACGU--ACCCCUgGCGGG- -5'
31252 3' -55.1 NC_006560.1 + 122008 0.68 0.86936
Target:  5'- aGGAGAcgcugcggcuGCAccgggaggGCGUGGGGACCcaggaccCCCg -3'
miRNA:   3'- -CCUCU----------CGUaaa-----CGUACCCCUGGc------GGG- -5'
31252 3' -55.1 NC_006560.1 + 119765 0.68 0.876682
Target:  5'- cGGGGGCGcugUGCcggGUGGcGGugcccCCGCCCg -3'
miRNA:   3'- cCUCUCGUaa-ACG---UACC-CCu----GGCGGG- -5'
31252 3' -55.1 NC_006560.1 + 119356 0.71 0.731844
Target:  5'- gGGAGAGCuacgccuaccucUGCcUGGGGuucaACCGCCg -3'
miRNA:   3'- -CCUCUCGuaa---------ACGuACCCC----UGGCGGg -5'
31252 3' -55.1 NC_006560.1 + 119213 0.69 0.821139
Target:  5'- cGGcGGGGCGaccgUGCGgacgacGGACCGCCCa -3'
miRNA:   3'- -CC-UCUCGUaa--ACGUacc---CCUGGCGGG- -5'
31252 3' -55.1 NC_006560.1 + 118526 0.78 0.331357
Target:  5'- gGGAG-GCGcugGCcgggGGGGACCGCCCc -3'
miRNA:   3'- -CCUCuCGUaaaCGua--CCCCUGGCGGG- -5'
31252 3' -55.1 NC_006560.1 + 118391 0.66 0.926999
Target:  5'- cGGGGGGCGg--GCGguucGGGcCCGaCCCc -3'
miRNA:   3'- -CCUCUCGUaaaCGUac--CCCuGGC-GGG- -5'
31252 3' -55.1 NC_006560.1 + 117705 0.66 0.941932
Target:  5'- gGGAGguacuGGCGccUGCGgucccGGGGCgGCCCg -3'
miRNA:   3'- -CCUC-----UCGUaaACGUac---CCCUGgCGGG- -5'
31252 3' -55.1 NC_006560.1 + 116130 0.7 0.737745
Target:  5'- uGGGGGcgaacGCGUggugcGCGUGGGGggugGCCGCCa -3'
miRNA:   3'- -CCUCU-----CGUAaa---CGUACCCC----UGGCGGg -5'
31252 3' -55.1 NC_006560.1 + 114861 0.66 0.941932
Target:  5'- gGGAGGgGCGgagacGCGcgGGGGucGCCGCUCc -3'
miRNA:   3'- -CCUCU-CGUaaa--CGUa-CCCC--UGGCGGG- -5'
31252 3' -55.1 NC_006560.1 + 112780 0.71 0.727892
Target:  5'- aGGAGuGCAUggcggUGUAccGGGACCucgugGCCCa -3'
miRNA:   3'- -CCUCuCGUAa----ACGUacCCCUGG-----CGGG- -5'
31252 3' -55.1 NC_006560.1 + 112520 0.66 0.92154
Target:  5'- -uGGAGCuca-GCGUGGGGcggcacgugcuGgCGCCCg -3'
miRNA:   3'- ccUCUCGuaaaCGUACCCC-----------UgGCGGG- -5'
31252 3' -55.1 NC_006560.1 + 111965 0.68 0.861824
Target:  5'- -uGGAGCGcUUUGCGgcccacgcgGGGGACCugGUCCc -3'
miRNA:   3'- ccUCUCGU-AAACGUa--------CCCCUGG--CGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.