miRNA display CGI


Results 41 - 60 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31252 3' -55.1 NC_006560.1 + 108511 0.68 0.876682
Target:  5'- gGGAGGGCGgccggcgGCGggcccGGGGGCgCGUCg -3'
miRNA:   3'- -CCUCUCGUaaa----CGUa----CCCCUG-GCGGg -5'
31252 3' -55.1 NC_006560.1 + 107329 0.67 0.890659
Target:  5'- -cAGcAGCAgcugGCcgGGGGcCCGCUCg -3'
miRNA:   3'- ccUC-UCGUaaa-CGuaCCCCuGGCGGG- -5'
31252 3' -55.1 NC_006560.1 + 106231 0.66 0.937195
Target:  5'- cGGGcucGCGUU--CGUGGaGACCGCCCg -3'
miRNA:   3'- cCUCu--CGUAAacGUACCcCUGGCGGG- -5'
31252 3' -55.1 NC_006560.1 + 105592 0.68 0.876682
Target:  5'- cGGGGGGCGcc-GCcccGGaGGCCGCCCc -3'
miRNA:   3'- -CCUCUCGUaaaCGuacCC-CUGGCGGG- -5'
31252 3' -55.1 NC_006560.1 + 103042 0.72 0.657102
Target:  5'- cGGGGcGCGg--GCGgccgcucGGGGGCCGCCg -3'
miRNA:   3'- -CCUCuCGUaaaCGUa------CCCCUGGCGGg -5'
31252 3' -55.1 NC_006560.1 + 102840 0.66 0.941932
Target:  5'- aGGGGGGCGgc-GguUGGGGAauggcgaGCCg -3'
miRNA:   3'- -CCUCUCGUaaaCguACCCCUgg-----CGGg -5'
31252 3' -55.1 NC_006560.1 + 102635 0.77 0.404049
Target:  5'- gGGGGAGguUaaaCGcGGGGGCCGCCCa -3'
miRNA:   3'- -CCUCUCguAaacGUaCCCCUGGCGGG- -5'
31252 3' -55.1 NC_006560.1 + 100178 0.68 0.84613
Target:  5'- uGGAGAGCAgc-GCGcGGGuGAgCGUCUc -3'
miRNA:   3'- -CCUCUCGUaaaCGUaCCC-CUgGCGGG- -5'
31252 3' -55.1 NC_006560.1 + 99001 0.68 0.879549
Target:  5'- -aAGAGCcggUGCGuuuauuguUGGGGAgugggggcgccccuaCCGCCCg -3'
miRNA:   3'- ccUCUCGuaaACGU--------ACCCCU---------------GGCGGG- -5'
31252 3' -55.1 NC_006560.1 + 95074 0.7 0.785433
Target:  5'- cGGAGAGCugg-GCGgacgucgcgGGccGGGCCGCCg -3'
miRNA:   3'- -CCUCUCGuaaaCGUa--------CC--CCUGGCGGg -5'
31252 3' -55.1 NC_006560.1 + 93612 0.71 0.717955
Target:  5'- cGGAGGGCGUUuucgUGCG-GGGGAagaugagCGCgCCa -3'
miRNA:   3'- -CCUCUCGUAA----ACGUaCCCCUg------GCG-GG- -5'
31252 3' -55.1 NC_006560.1 + 90459 0.66 0.941469
Target:  5'- gGGGGGGCGggacgGCG-GGGccgcaaaGGCgGCCCa -3'
miRNA:   3'- -CCUCUCGUaaa--CGUaCCC-------CUGgCGGG- -5'
31252 3' -55.1 NC_006560.1 + 90341 0.68 0.876682
Target:  5'- -uGGAcGCcgUcGCGcGGGcGGCCGCCCa -3'
miRNA:   3'- ccUCU-CGuaAaCGUaCCC-CUGGCGGG- -5'
31252 3' -55.1 NC_006560.1 + 87874 0.68 0.876682
Target:  5'- uGGGGcGCGg--GUggGGGGGCgCGCCg -3'
miRNA:   3'- -CCUCuCGUaaaCGuaCCCCUG-GCGGg -5'
31252 3' -55.1 NC_006560.1 + 85872 0.66 0.937195
Target:  5'- --cGAGCcccgccgGCAgGGGGugCGCCa -3'
miRNA:   3'- ccuCUCGuaaa---CGUaCCCCugGCGGg -5'
31252 3' -55.1 NC_006560.1 + 85527 0.68 0.861824
Target:  5'- cGGGGGCGcUUGgG-GGGGGCgggggCGCCCg -3'
miRNA:   3'- cCUCUCGUaAACgUaCCCCUG-----GCGGG- -5'
31252 3' -55.1 NC_006560.1 + 83349 0.68 0.837986
Target:  5'- aGGAGGGCGcggGCGgcggcccGGGGCCccaGCCCu -3'
miRNA:   3'- -CCUCUCGUaaaCGUac-----CCCUGG---CGGG- -5'
31252 3' -55.1 NC_006560.1 + 82804 0.67 0.903721
Target:  5'- cGGGAGgGg--GCGgaGGGGacgcGCCGCCCc -3'
miRNA:   3'- cCUCUCgUaaaCGUa-CCCC----UGGCGGG- -5'
31252 3' -55.1 NC_006560.1 + 82502 0.67 0.883783
Target:  5'- cGAcAGCAgcgcGCAgucGGGGAUCGCCUc -3'
miRNA:   3'- cCUcUCGUaaa-CGUa--CCCCUGGCGGG- -5'
31252 3' -55.1 NC_006560.1 + 81857 0.67 0.897306
Target:  5'- aGGuacGGGU---UGCA-GGGGAcguCCGCCCa -3'
miRNA:   3'- -CCu--CUCGuaaACGUaCCCCU---GGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.