miRNA display CGI


Results 61 - 80 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31252 3' -55.1 NC_006560.1 + 81471 0.7 0.766711
Target:  5'- gGGAGAGCGgg-----GGGGAgCGCCg -3'
miRNA:   3'- -CCUCUCGUaaacguaCCCCUgGCGGg -5'
31252 3' -55.1 NC_006560.1 + 80808 0.71 0.707945
Target:  5'- gGGGGAGgGggcUGCGggGcGGGGCgCGCCCg -3'
miRNA:   3'- -CCUCUCgUaa-ACGUa-C-CCCUG-GCGGG- -5'
31252 3' -55.1 NC_006560.1 + 76850 0.66 0.92154
Target:  5'- -aAGAGCGccgaGCGggcGGGGGCCGUCg -3'
miRNA:   3'- ccUCUCGUaaa-CGUa--CCCCUGGCGGg -5'
31252 3' -55.1 NC_006560.1 + 74934 0.69 0.829653
Target:  5'- cGAGAGCAcg-GuCGaGGcGGCCGCCCg -3'
miRNA:   3'- cCUCUCGUaaaC-GUaCCcCUGGCGGG- -5'
31252 3' -55.1 NC_006560.1 + 74415 0.66 0.934237
Target:  5'- cGGAcGAGCugucgcccgagGCGc-GGGACCGCCUc -3'
miRNA:   3'- -CCU-CUCGuaaa-------CGUacCCCUGGCGGG- -5'
31252 3' -55.1 NC_006560.1 + 74048 0.72 0.667346
Target:  5'- cGGGAGCugcUGCAgcgGGGGugCGaCCUg -3'
miRNA:   3'- cCUCUCGuaaACGUa--CCCCugGC-GGG- -5'
31252 3' -55.1 NC_006560.1 + 73330 0.66 0.915839
Target:  5'- aGGAGGGCucggGCGUc--GGCCGCCUg -3'
miRNA:   3'- -CCUCUCGuaaaCGUAcccCUGGCGGG- -5'
31252 3' -55.1 NC_006560.1 + 71646 0.72 0.657102
Target:  5'- uGGAGGGCGgg-GCGUGGacgcGGGCCucggccggcggcGCCCc -3'
miRNA:   3'- -CCUCUCGUaaaCGUACC----CCUGG------------CGGG- -5'
31252 3' -55.1 NC_006560.1 + 70931 0.67 0.909899
Target:  5'- uGGGGGGacuacaGCcUGGGG-CCGCUCg -3'
miRNA:   3'- -CCUCUCguaaa-CGuACCCCuGGCGGG- -5'
31252 3' -55.1 NC_006560.1 + 70622 0.7 0.766711
Target:  5'- gGGGGAGCAcgUGCcgGGGuuCUGCUUc -3'
miRNA:   3'- -CCUCUCGUaaACGuaCCCcuGGCGGG- -5'
31252 3' -55.1 NC_006560.1 + 70316 0.67 0.890659
Target:  5'- cGGGGAGCGcgUGUacgccgugGUcGGGGAggcccccgaCCGCCUg -3'
miRNA:   3'- -CCUCUCGUaaACG--------UA-CCCCU---------GGCGGG- -5'
31252 3' -55.1 NC_006560.1 + 69263 0.67 0.883783
Target:  5'- uGGAGGGCuuccugGCcgcGGGcGGCgGCCCc -3'
miRNA:   3'- -CCUCUCGuaaa--CGua-CCC-CUGgCGGG- -5'
31252 3' -55.1 NC_006560.1 + 68927 0.66 0.92154
Target:  5'- aGGAGGuGC----GCGUGucGGCCGCCCu -3'
miRNA:   3'- -CCUCU-CGuaaaCGUACccCUGGCGGG- -5'
31252 3' -55.1 NC_006560.1 + 67148 0.72 0.657102
Target:  5'- gGGGGGGCGgggugGgGUGGGGAgaCGCCg -3'
miRNA:   3'- -CCUCUCGUaaa--CgUACCCCUg-GCGGg -5'
31252 3' -55.1 NC_006560.1 + 66715 0.7 0.776137
Target:  5'- gGGGGGGCGUgcUGCcgGGccaGGGCCgggaagucGCCCg -3'
miRNA:   3'- -CCUCUCGUAa-ACGuaCC---CCUGG--------CGGG- -5'
31252 3' -55.1 NC_006560.1 + 66335 0.72 0.667346
Target:  5'- cGGuGuGCGcg-GCcucGUGGGGGCCGCCg -3'
miRNA:   3'- -CCuCuCGUaaaCG---UACCCCUGGCGGg -5'
31252 3' -55.1 NC_006560.1 + 65997 0.8 0.250116
Target:  5'- gGGAGAGCAc---CGUGGGGACCGCg- -3'
miRNA:   3'- -CCUCUCGUaaacGUACCCCUGGCGgg -5'
31252 3' -55.1 NC_006560.1 + 65745 0.73 0.585287
Target:  5'- uGGGGGGC--------GGGGACCGCCCu -3'
miRNA:   3'- -CCUCUCGuaaacguaCCCCUGGCGGG- -5'
31252 3' -55.1 NC_006560.1 + 65318 0.66 0.915839
Target:  5'- gGGGGuGGCGaaucaGgGUGGGGGCCgGCUCg -3'
miRNA:   3'- -CCUC-UCGUaaa--CgUACCCCUGG-CGGG- -5'
31252 3' -55.1 NC_006560.1 + 64841 0.66 0.941932
Target:  5'- -aGGAGCAg--GC-UGGGGucgcgcgcgccgGCgCGCCCa -3'
miRNA:   3'- ccUCUCGUaaaCGuACCCC------------UG-GCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.