Results 41 - 60 of 165 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31252 | 3' | -55.1 | NC_006560.1 | + | 32687 | 0.76 | 0.43042 |
Target: 5'- aGAGGGCcgggGCcgGGGGcuCCGCCCg -3' miRNA: 3'- cCUCUCGuaaaCGuaCCCCu-GGCGGG- -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 102635 | 0.77 | 0.404049 |
Target: 5'- gGGGGAGguUaaaCGcGGGGGCCGCCCa -3' miRNA: 3'- -CCUCUCguAaacGUaCCCCUGGCGGG- -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 40072 | 0.77 | 0.395488 |
Target: 5'- gGGAGGGgAUggcgUGCgGUGGGGGCggggCGCCCg -3' miRNA: 3'- -CCUCUCgUAa---ACG-UACCCCUG----GCGGG- -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 118526 | 0.78 | 0.331357 |
Target: 5'- gGGAG-GCGcugGCcgggGGGGACCGCCCc -3' miRNA: 3'- -CCUCuCGUaaaCGua--CCCCUGGCGGG- -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 65997 | 0.8 | 0.250116 |
Target: 5'- gGGAGAGCAc---CGUGGGGACCGCg- -3' miRNA: 3'- -CCUCUCGUaaacGUACCCCUGGCGgg -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 27839 | 0.74 | 0.564965 |
Target: 5'- gGGGGuGCcgggggUGCcgGGGGucucCCGCCCg -3' miRNA: 3'- -CCUCuCGuaa---ACGuaCCCCu---GGCGGG- -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 39312 | 0.74 | 0.564965 |
Target: 5'- cGGGccGGGCGgg-GCgGUGGGGcgggGCCGCCCg -3' miRNA: 3'- -CCU--CUCGUaaaCG-UACCCC----UGGCGGG- -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 71646 | 0.72 | 0.657102 |
Target: 5'- uGGAGGGCGgg-GCGUGGacgcGGGCCucggccggcggcGCCCc -3' miRNA: 3'- -CCUCUCGUaaaCGUACC----CCUGG------------CGGG- -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 67148 | 0.72 | 0.657102 |
Target: 5'- gGGGGGGCGgggugGgGUGGGGAgaCGCCg -3' miRNA: 3'- -CCUCUCGUaaa--CgUACCCCUg-GCGGg -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 34544 | 0.72 | 0.657102 |
Target: 5'- gGGGGAuGUGUgUGCggGGGGGCgGCCg -3' miRNA: 3'- -CCUCU-CGUAaACGuaCCCCUGgCGGg -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 12797 | 0.72 | 0.657102 |
Target: 5'- gGGAGGGaccCGUcgGCc-GGGGGCCGCUCg -3' miRNA: 3'- -CCUCUC---GUAaaCGuaCCCCUGGCGGG- -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 53693 | 0.72 | 0.657102 |
Target: 5'- cGGcGAGCAcgUacuacacgcGCAUGGacGGGCCGCCCc -3' miRNA: 3'- -CCuCUCGUaaA---------CGUACC--CCUGGCGGG- -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 29071 | 0.72 | 0.646838 |
Target: 5'- cGGcGGGGCccgccCGUcGGGGACCGCCCc -3' miRNA: 3'- -CC-UCUCGuaaacGUA-CCCCUGGCGGG- -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 58334 | 0.72 | 0.636562 |
Target: 5'- cGAGAGCGcgcGCuuggaggGGGGGCgCGCCCc -3' miRNA: 3'- cCUCUCGUaaaCGua-----CCCCUG-GCGGG- -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 28214 | 0.72 | 0.636562 |
Target: 5'- cGGGGAGCGUcgGCccGGGccgccGGCCGUCUg -3' miRNA: 3'- -CCUCUCGUAaaCGuaCCC-----CUGGCGGG- -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 131657 | 0.72 | 0.633478 |
Target: 5'- uGGAGGGCGUcgccggcgaggcccUgGCGggcgGGGGGCUGCuCCg -3' miRNA: 3'- -CCUCUCGUA--------------AaCGUa---CCCCUGGCG-GG- -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 44327 | 0.73 | 0.605745 |
Target: 5'- cGGGGcGCuc-UGCGgcugGGGGGCgCGCCCc -3' miRNA: 3'- -CCUCuCGuaaACGUa---CCCCUG-GCGGG- -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 65745 | 0.73 | 0.585287 |
Target: 5'- uGGGGGGC--------GGGGACCGCCCu -3' miRNA: 3'- -CCUCUCGuaaacguaCCCCUGGCGGG- -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 33632 | 0.73 | 0.585287 |
Target: 5'- gGGGGGGCGggggGCGccGGGGGCgGCCg -3' miRNA: 3'- -CCUCUCGUaaa-CGUa-CCCCUGgCGGg -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 32885 | 0.73 | 0.585287 |
Target: 5'- cGGGGAGgcc--GCggGGGGGCgCGCCCg -3' miRNA: 3'- -CCUCUCguaaaCGuaCCCCUG-GCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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