Results 81 - 100 of 165 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31252 | 3' | -55.1 | NC_006560.1 | + | 93612 | 0.71 | 0.717955 |
Target: 5'- cGGAGGGCGUUuucgUGCG-GGGGAagaugagCGCgCCa -3' miRNA: 3'- -CCUCUCGUAA----ACGUaCCCCUg------GCG-GG- -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 32924 | 0.71 | 0.727892 |
Target: 5'- cGGGGGCcgaggGCA-GGGGGCCGUCg -3' miRNA: 3'- cCUCUCGuaaa-CGUaCCCCUGGCGGg -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 34205 | 0.71 | 0.727892 |
Target: 5'- cGGGGGGaCGgggGCG-GGGGAcgccgggcgcCCGCCCa -3' miRNA: 3'- -CCUCUC-GUaaaCGUaCCCCU----------GGCGGG- -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 112780 | 0.71 | 0.727892 |
Target: 5'- aGGAGuGCAUggcggUGUAccGGGACCucgugGCCCa -3' miRNA: 3'- -CCUCuCGUAa----ACGUacCCCUGG-----CGGG- -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 119356 | 0.71 | 0.731844 |
Target: 5'- gGGAGAGCuacgccuaccucUGCcUGGGGuucaACCGCCg -3' miRNA: 3'- -CCUCUCGuaa---------ACGuACCCC----UGGCGGg -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 128661 | 0.7 | 0.737745 |
Target: 5'- cGGGGAGCugcucgUGUAUauggacggggcGGGGGCgCGCUCg -3' miRNA: 3'- -CCUCUCGuaa---ACGUA-----------CCCCUG-GCGGG- -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 116130 | 0.7 | 0.737745 |
Target: 5'- uGGGGGcgaacGCGUggugcGCGUGGGGggugGCCGCCa -3' miRNA: 3'- -CCUCU-----CGUAaa---CGUACCCC----UGGCGGg -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 80808 | 0.71 | 0.707945 |
Target: 5'- gGGGGAGgGggcUGCGggGcGGGGCgCGCCCg -3' miRNA: 3'- -CCUCUCgUaa-ACGUa-C-CCCUG-GCGGG- -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 30280 | 0.71 | 0.707945 |
Target: 5'- aGGGGAGgGgagUG-GUGGGGaggguguugcuGCCGCCCg -3' miRNA: 3'- -CCUCUCgUaa-ACgUACCCC-----------UGGCGGG- -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 26140 | 0.71 | 0.70694 |
Target: 5'- -cGGGGC---UGCGUGGGGGcgcggcaggggccCCGCCCc -3' miRNA: 3'- ccUCUCGuaaACGUACCCCU-------------GGCGGG- -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 34544 | 0.72 | 0.657102 |
Target: 5'- gGGGGAuGUGUgUGCggGGGGGCgGCCg -3' miRNA: 3'- -CCUCU-CGUAaACGuaCCCCUGgCGGg -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 67148 | 0.72 | 0.657102 |
Target: 5'- gGGGGGGCGgggugGgGUGGGGAgaCGCCg -3' miRNA: 3'- -CCUCUCGUaaa--CgUACCCCUg-GCGGg -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 71646 | 0.72 | 0.657102 |
Target: 5'- uGGAGGGCGgg-GCGUGGacgcGGGCCucggccggcggcGCCCc -3' miRNA: 3'- -CCUCUCGUaaaCGUACC----CCUGG------------CGGG- -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 103042 | 0.72 | 0.657102 |
Target: 5'- cGGGGcGCGg--GCGgccgcucGGGGGCCGCCg -3' miRNA: 3'- -CCUCuCGUaaaCGUa------CCCCUGGCGGg -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 66335 | 0.72 | 0.667346 |
Target: 5'- cGGuGuGCGcg-GCcucGUGGGGGCCGCCg -3' miRNA: 3'- -CCuCuCGUaaaCG---UACCCCUGGCGGg -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 74048 | 0.72 | 0.667346 |
Target: 5'- cGGGAGCugcUGCAgcgGGGGugCGaCCUg -3' miRNA: 3'- cCUCUCGuaaACGUa--CCCCugGC-GGG- -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 44746 | 0.72 | 0.667346 |
Target: 5'- cGGAGAGCGacgUUGuCAUGGaGGACgUGgCCa -3' miRNA: 3'- -CCUCUCGUa--AAC-GUACC-CCUG-GCgGG- -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 53612 | 0.72 | 0.669391 |
Target: 5'- gGGAGAGCGUcgacucccucgGCGcccUGcggcggcucguugccGGGGCCGCCCg -3' miRNA: 3'- -CCUCUCGUAaa---------CGU---AC---------------CCCUGGCGGG- -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 128283 | 0.72 | 0.677561 |
Target: 5'- gGGGGGGgAgg-GCcccGGGGGCgCGCCCg -3' miRNA: 3'- -CCUCUCgUaaaCGua-CCCCUG-GCGGG- -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 145160 | 0.71 | 0.686723 |
Target: 5'- gGGGGGGCc---GCAcuccccgccucccUGGGGGgCGCCCu -3' miRNA: 3'- -CCUCUCGuaaaCGU-------------ACCCCUgGCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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