Results 101 - 120 of 165 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31252 | 3' | -55.1 | NC_006560.1 | + | 66715 | 0.7 | 0.776137 |
Target: 5'- gGGGGGGCGUgcUGCcgGGccaGGGCCgggaagucGCCCg -3' miRNA: 3'- -CCUCUCGUAa-ACGuaCC---CCUGG--------CGGG- -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 16377 | 0.7 | 0.785433 |
Target: 5'- gGGGGGGCAUggcgGCGcgGGcGGGCguCGCCUg -3' miRNA: 3'- -CCUCUCGUAaa--CGUa-CC-CCUG--GCGGG- -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 33405 | 0.7 | 0.785433 |
Target: 5'- aGGGGGGCGcggGC--GGGGAgCGCCg -3' miRNA: 3'- -CCUCUCGUaaaCGuaCCCCUgGCGGg -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 50628 | 0.7 | 0.785433 |
Target: 5'- cGuGGGCGacaUGCAcaUGGGGGCC-CCCg -3' miRNA: 3'- cCuCUCGUaa-ACGU--ACCCCUGGcGGG- -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 95074 | 0.7 | 0.785433 |
Target: 5'- cGGAGAGCugg-GCGgacgucgcgGGccGGGCCGCCg -3' miRNA: 3'- -CCUCUCGuaaaCGUa--------CC--CCUGGCGGg -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 112780 | 0.71 | 0.727892 |
Target: 5'- aGGAGuGCAUggcggUGUAccGGGACCucgugGCCCa -3' miRNA: 3'- -CCUCuCGUAa----ACGUacCCCUGG-----CGGG- -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 34205 | 0.71 | 0.727892 |
Target: 5'- cGGGGGGaCGgggGCG-GGGGAcgccgggcgcCCGCCCa -3' miRNA: 3'- -CCUCUC-GUaaaCGUaCCCCU----------GGCGGG- -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 74048 | 0.72 | 0.667346 |
Target: 5'- cGGGAGCugcUGCAgcgGGGGugCGaCCUg -3' miRNA: 3'- cCUCUCGuaaACGUa--CCCCugGC-GGG- -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 44746 | 0.72 | 0.667346 |
Target: 5'- cGGAGAGCGacgUUGuCAUGGaGGACgUGgCCa -3' miRNA: 3'- -CCUCUCGUa--AAC-GUACC-CCUG-GCgGG- -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 53612 | 0.72 | 0.669391 |
Target: 5'- gGGAGAGCGUcgacucccucgGCGcccUGcggcggcucguugccGGGGCCGCCCg -3' miRNA: 3'- -CCUCUCGUAaa---------CGU---AC---------------CCCUGGCGGG- -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 128283 | 0.72 | 0.677561 |
Target: 5'- gGGGGGGgAgg-GCcccGGGGGCgCGCCCg -3' miRNA: 3'- -CCUCUCgUaaaCGua-CCCCUG-GCGGG- -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 145160 | 0.71 | 0.686723 |
Target: 5'- gGGGGGGCc---GCAcuccccgccucccUGGGGGgCGCCCu -3' miRNA: 3'- -CCUCUCGuaaaCGU-------------ACCCCUgGCGGG- -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 26140 | 0.71 | 0.70694 |
Target: 5'- -cGGGGC---UGCGUGGGGGcgcggcaggggccCCGCCCc -3' miRNA: 3'- ccUCUCGuaaACGUACCCCU-------------GGCGGG- -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 30280 | 0.71 | 0.707945 |
Target: 5'- aGGGGAGgGgagUG-GUGGGGaggguguugcuGCCGCCCg -3' miRNA: 3'- -CCUCUCgUaa-ACgUACCCC-----------UGGCGGG- -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 80808 | 0.71 | 0.707945 |
Target: 5'- gGGGGAGgGggcUGCGggGcGGGGCgCGCCCg -3' miRNA: 3'- -CCUCUCgUaa-ACGUa-C-CCCUG-GCGGG- -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 127357 | 0.71 | 0.707945 |
Target: 5'- cGGGGAcGCGUagaaGCA-GGGaaaGGCCGCCCg -3' miRNA: 3'- -CCUCU-CGUAaa--CGUaCCC---CUGGCGGG- -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 25832 | 0.71 | 0.717955 |
Target: 5'- gGGAGAGgGgacgGCGUGGccGGGCgcgCGCCCg -3' miRNA: 3'- -CCUCUCgUaaa-CGUACC--CCUG---GCGGG- -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 58380 | 0.71 | 0.717955 |
Target: 5'- gGGGGAGCGgcgcccGCGUcggcgcccccGGGGGCCGCg- -3' miRNA: 3'- -CCUCUCGUaaa---CGUA----------CCCCUGGCGgg -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 93612 | 0.71 | 0.717955 |
Target: 5'- cGGAGGGCGUUuucgUGCG-GGGGAagaugagCGCgCCa -3' miRNA: 3'- -CCUCUCGUAA----ACGUaCCCCUg------GCG-GG- -5' |
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31252 | 3' | -55.1 | NC_006560.1 | + | 32924 | 0.71 | 0.727892 |
Target: 5'- cGGGGGCcgaggGCA-GGGGGCCGUCg -3' miRNA: 3'- cCUCUCGuaaa-CGUaCCCCUGGCGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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